Table 1

Functional classification of differentially expressed genes associated with enriched GO terms1

GO components

Gene number3

P value2

Depth


A. Biological process

lipid transport

GO:0006869

7

3.61E-07

3

lipid localization

GO:0010876

7

3.61E-07

3

response to stress

GO:0006950

12

2.33E-05

2

carbohydrate metabolic process

GO:0005975

11

6.38E-04

3

macromolecule localization

GO:0033036

7

1.91E-03

2

regulation of transcription, DNA-dependent

GO:0006355

8

4.07E-03

5

regulation of RNA metabolic process

GO:0051252

8

4.17E-03

4

transcription, DNA-dependent

GO:0006351

8

5.69E-03

5

RNA biosynthetic process

GO:0032774

8

5.69E-03

4

primary metabolic process

GO:0044238

39

6.51E-03

2

B. Molecular function

hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0004553

7

8.41E-04

4

oxidoreductase activity

GO:0016491

20

4.41E-03

2


1Differentially expressed genes with fold change of > = 2 are classified here.

2P values were calculated using Fisher's exact test.

3Only groups with more than 5 genes/transcripts were listed here.

Liu et al. BMC Genomics 2010 11:730   doi:10.1186/1471-2164-11-730

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