Table 1

asMIP targets

Gene

tissue specificity

con1

alt2

total


CAMK2D*

neural

8 (4)

5 (5)

13 (9)

CLTB*

neural

3 (3)

3 (3)

6 (6)

EHBP1*

neural

8 (3)

4 (4)

12 (7)

ERC1*

neural

8 (4)

10 (10)

18 (14)

FEZ2*

neural

2 (2)

9 (9)

11 (11)

MARK4

neural

8

3

11

MINK1

neural

11

10

21

MLLT4

neural

9

10

19

MYH10

neural

15

8

23

MYO6

neural

10

6

16

TPD52

neural

3

6

9

TPM1

muscle

5

7

12

TPM2

muscle

5

6

11

TPM3

muscle

4

6

10

ACTB

control

5

0

5

GAPDH

control

8

0

8

TUBA1B

control

3

0

3


totals:

115

93

208


Numbers in parentheses correspond to total junctions analyzed by qPCR.

1 The number of predicted constitutive exon junctions targeted by asMIPs indentified from RefSeq [21].

2 The number of potentially alternatively spliced exon junctions targeted identified from RefSeq [21], of which 58 were confirmed in the literature to be alternatively spliced in the tissues we studied [10,20].

* Genes that were assayed with both asMIPs and qPCR.

Lin et al. BMC Genomics 2010 11:712   doi:10.1186/1471-2164-11-712

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