Table 2

Number of protein-protein interactions for the different classes.

Interaction

Ribosomal

Operon

Non-operon

(45/43/43)

(73/45/29)

(86/62/52)


Ribosomal

MINT db

54 (57)

138

363

Permutation

121.7 (120.1)

97.1 (111.9)

245.3 (242.3)

P-value

1.0 (1.0)

0 (0)

0 (0)


Operon

MINT db

20 (62)

56

Permutation

16.9 (26.0)

94.2 (112.8)

P-value

0 (0)

1.0 (1.0)


Non-operon

MINT db

57 (110)

Permutation

112.8 (121.7)

P-value

1.0 (0.95)


The numbers shown are for all pairs of persistent genes found in MINT, both without (and with) self interactions included. The table also shows the average number of protein-protein interactions after 10,000 permutations, and estimated p-values for getting a number of interactions after permutation that is larger than the experimental one. The number of genes of each class in the full set, represented in MINT and found as interaction pairs in MINT is shown in the table header.

Bratlie et al. BMC Genomics 2010 11:71   doi:10.1186/1471-2164-11-71

Open Data