Table 1

Summary of genotyping and re-sequencing of 11 genes determining growth habit and one gene determining inflorescence type

Locus

VRN-H1

VRN-H2

VRN-H2

VRN-H2

VRN-H2

VRN-H3

VRS1

PPD-H2

PPD-H1

FR-H2

FR-H2

FR-H2

Gene

BM5A

ZCCT-Ha

ZCCT-Hb

ZCCT-Hc

HvSNF2

HvFT1

HvHOX1

HvFT3

HvPRR7

HvCBF3

HvCBF6

HvCBF9


Accessions Genotyped(1)

102

102

102

102

102

102

102

102

102

0

102

0

Number of alleles/amplicon sizes

5

2

2

2

2

2

6

2

2

0

2

0


Accessions re-sequenced(2)

102

-

-

-

30

102

102

26

30

30

30

30

Number of haplotypes

6

-

-

-

4

7

7

3

6

5

6

6

Sequence length (bp)

668

-

-

-

632

5670

1192

1467

1355

874

913

988


(1) Gel-based characterization of SNP, InDels

(2) Cloning and sequencing of a gene or putative functional domain within a gene

ZCCT-H gene family members are present or absent

Cuesta-Marcos et al. BMC Genomics 2010 11:707   doi:10.1186/1471-2164-11-707

Open Data