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Open Access Research article

Global characterization of the root transcriptome of a wild species of rice, Oryza longistaminata, by deep sequencing

Haiyuan Yang, Liwei Hu, Thomas Hurek and Barbara Reinhold-Hurek*

Author Affiliations

Laboratory of General Microbiology, Faculty of Biology and Chemistry, University of Bremen, PO. Box 330440, D-28334 Bremen, Germany

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BMC Genomics 2010, 11:705  doi:10.1186/1471-2164-11-705

Published: 15 December 2010

Additional files

Additional file 1:

Source of O. longistaminata root ESTs.

Format: PDF Size: 119KB Download file

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Open Data

Additional file 2:

Characterization of O. longistaminata ESTs before and after assembly.

Format: PDF Size: 17KB Download file

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Open Data

Additional file 3:

Summary of component reads per assembly.

Format: PDF Size: 9KB Download file

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Open Data

Additional file 4:

Consensus sequences specifically matched to indica or japonica genome sequences.

Format: PDF Size: 203KB Download file

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Open Data

Additional file 5:

O. longistaminata ESTs analyzed by RT-PCR from cDNA of pot-grown O. longistaminata rice roots.

Format: PDF Size: 16KB Download file

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Open Data

Additional file 6:

Assembled pyrosequencing ESTs. The data represent all the assembled pyrosequencing ESTs.

Format: TXT Size: 19.4MB Download file

Open Data