Table 3

Gene content vs SSR abundance, and G/C content vs SSR heterozygosity

Table 3a: Gene content vs SSR abundance


Motif Size


Abundance

1

2

3

4

5

6

2 to 6

Gene Content


scaffold_18

+

scaffold_32

+

+

+

scaffold_43

+

+

scaffold_58

+

scaffold_59

+

scaffold_62

+

scaffold_66

-

scaffold_67

+

+

scaffold_68

+

scaffold_74

+

+

-

scaffold_76

+

+

+

scaffold_81

+

scaffold_82

+

+

-

scaffold_84

-

scaffold_85

+

scaffold_88

+

scaffold_90

+

+

scaffold_98

-


Table 3b: G/C content vs SSR heterozygosity


Motif Size


Heterozygosity

1

2

3

4

5

6

2 to 6

G/C Content


scaffold_7

+

scaffold_18

+

scaffold_19

+

scaffold_20

+

scaffold_24

+

+

scaffold_30

+

+

+

+

scaffold_32

+

scaffold_33

+

scaffold_43

+

scaffold_63

+

scaffold_69

+

scaffold_75

+

scaffold_76

+

+

+

scaffold_77

+

+

scaffold_82

-

scaffold_90

+

+

+

+

scaffold_94

+


This table shows motif sizes that are significantly greater than (+) or less than (-) the overall scaffold mean.

Motif Sizes that are significantly different (2 standard deviations) from the overall scaffold mean using Generalized Extreme Studentized Deviate (ESD) are bolded (p < 0.05, df = 98). Column 2 to 6 is the cumulative sum of motif sizes 2 to 6 (homopolymers excluded).

Sung et al. BMC Genomics 2010 11:691   doi:10.1186/1471-2164-11-691

Open Data