Table 2

De novo assembly statistics for the 8 Listeria strains sequenced here

Strain

number of scaffolds

N50 scaffolds

number of contigs

N50 contigs

Estimated number of ORFs


L. monocytogenes

FSL F2-208

1,437

49,992

2,531

2,639

2,910

FSL R2-574

163

1,433,496

1,538

3,241

NDa

L. marthii

FSL S4-120

404

257,992

925

7,850

2,724

L. innocua

FSL S4-378

896

102,515

1,837

4,230

2,885

FSL J1-023

324

247,625

790

9,133

2,737

L. ivanovii

FSL F6-596

601

95,455

1,463

5,168

2,919

L. seeligeri

FSL N1-067

343

282,765

785

10,831

3,017

FSL S4-171

216

226,677

868

5,655

2,820


a ND = not done. This strain is a duplicate of L. monocytogenes F2365 and was included to assess the assembly methods used in this study.

den Bakker et al. BMC Genomics 2010 11:688   doi:10.1186/1471-2164-11-688

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