Table 1

General features of NRG857c genome and other E. coli strains

Chromosome

Plasmid(s)


Strain

Serotype

Pathotype

Phylogroup

Accession No.

Size (kb)

Total CDS

CDS density (%)

G+C (%)

Total tRNAs

Accession No.

Size (kb)


NRG857c

O83:H1

AIEC

B2

CP001855

4,748

4,431

88.2

50.7

84

CP001856

147

LF82

O83:H1

AIEC

B2

CU651637

4,773

4,312

87.7

50.7

84

CU638872

108

E2348/69

O127:H6

EPEC

B2

FM180568

4,965

4,703

88.2

50.6

92

FM180569 FM180570

97, 6

UTI89

UPEC

B2

CP000243

5,065

5,066

91.1

50.6

88

CP000244

114

CFT073

O6:K2:H1

UPEC

B2

AE014075

5,231

5,473

91.9

50.5

89

536

O6:K15:H31

UPEC

B2

CP000247

4,938

4685

88.7

50.5

81

APEC-O1

O1:K1:H7

APEC

B2

CP000468

5,082

4,467

87.5

50.6

94

DQ381420 DQ517526

241, 174, 105, 46

O157 Sakai

O157:H7

EHEC

E

BA000007

5,498

5,361

88.1

50.5

105

AB011548 AB011549

92, 3

MG1655 (K-12)

OR:H48:K-

Commensal

A

U00096

4,639

4,294

89.0

50.8

88

HS

O9

Commensal

A

CP000802

4,643

4,478

88.7

50.8

88

E24377A

O139:H28

ETEC

B1

CP000800

4,979

4,873

88.6

50.6

91

CP000795- CP000799 CP000801

79, 74, 70, 34, 6, 5


Nash et al. BMC Genomics 2010 11:667   doi:10.1186/1471-2164-11-667

Open Data