Table 1

SNP variation within line observed with the 5X genome resequencing.

SNP variation

No. of SNPs

Fraction of SNPs (%)


All reads from both lines differ from the reference

719 288

22


All reads from one line differ from the reference

1 338 437

40


One line biallelic

1 175 291

35


Both lines biallelic

109 796

3


Counts and fraction of the 3 342 812 SNPs detected in genome resequencing based on their variation within line and against the RJF reference.

Marklund and Carlborg BMC Genomics 2010 11:665   doi:10.1186/1471-2164-11-665

Open Data