Email updates

Keep up to date with the latest news and content from BMC Genomics and BioMed Central.

Open Access Correspondence

Re-examination of chimp protein kinases suggests "novel architectures" are gene prediction artifacts

Keith Robison

Author affiliations

Omics! Omics!, 73 Tewksbury St, Andover MA 01810, USA

Current address: Infinity Pharmaceuticals Inc. 780 Memorial Drive. Cambridge MA 02139, USA

Citation and License

BMC Genomics 2010, 11:66  doi:10.1186/1471-2164-11-66

Published: 27 January 2010

Abstract

Background

Anamika et al[1] recently published in this journal a sequence alignment analysis of protein kinases encoded by the chimpanzee genome in comparison to those in the human genome. From this analysis they concluded that several chimpanzee kinases have unusual domain arrangements.

Results

Re-examination of these kinases reveals claimed novel arrangements cannot withstand scrutiny; each is either not novel or represents over-analysis of weakly confident computer generated gene models. Additional sequence evidence available at the time of the paper's submission either directly contradict the gene models or suggest alternate gene models. These alternate models would minimize or eliminate the observed differences between human and chimp kinases.

Conclusion

None of the proposed novel chimpanzee kinase architectures are supported by experiment evidence. Guidelines to prevent such erroneous conclusions in similar papers are proposed.