Table 4

Comparative testing results of POLYAR, polya_svm and polyadq programs on coding sequences of 17600 human genes

Programs

TN

FP

Total5

SN6


POLYAR, All1

13503

4097

7920

76.72%

PAS-strong2

14091

3509

6005

80.06%

PAS-weak3

15012

2588

4308

85.30%

PAS_less4

16699

901

1351

94.88%

polya_svm

13290

4310

6472

75.51%

polyadq

16010

1590

1794

90.97%


1 Search for poly(A) sites of all 3 classes. 2-4 Search for only PAS-strong, PAS-weak and PAS-less poly(A) sites, respectively. 5 Totally predicted sites. 6 Sensitivity was calculated by formula [13].

Akhtar et al. BMC Genomics 2010 11:646   doi:10.1186/1471-2164-11-646

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