Table 2 |
|||||
|
Variant identification results across target region by sample. |
|||||
|
Sample |
Plexity |
Total SNPs* |
Annotated |
Novel |
% Annotated |
|
|
|||||
|
A1 |
Uniplex |
2,399 |
1,839 |
560 |
77% |
|
A2 |
Duplex |
1,462 |
991 |
471 |
68% |
|
B1 |
Duplex |
2,385 |
1,627 |
758 |
68% |
|
A3 |
Pentaplex |
2,102 |
1,242 |
860 |
59% |
|
B2 |
Pentaplex |
1,910 |
1,289 |
621 |
67% |
|
C1 |
Pentaplex |
2,033 |
1,362 |
671 |
67% |
|
D1 |
Pentaplex |
2,600 |
1,904 |
696 |
73% |
|
E1 |
Pentaplex |
2,390 |
1,760 |
630 |
74% |
|
|
|||||
|
* Calculations performed using confidence parameter of 70 in GATK. |
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|
Cummings et al. BMC Genomics 2010 11:641 doi:10.1186/1471-2164-11-641 |
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