Table 2

Variant identification results across target region by sample.

Sample

Plexity

Total SNPs*

Annotated

Novel

% Annotated


A1

Uniplex

2,399

1,839

560

77%

A2

Duplex

1,462

991

471

68%

B1

Duplex

2,385

1,627

758

68%

A3

Pentaplex

2,102

1,242

860

59%

B2

Pentaplex

1,910

1,289

621

67%

C1

Pentaplex

2,033

1,362

671

67%

D1

Pentaplex

2,600

1,904

696

73%

E1

Pentaplex

2,390

1,760

630

74%


* Calculations performed using confidence parameter of 70 in GATK.

Cummings et al. BMC Genomics 2010 11:641   doi:10.1186/1471-2164-11-641

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