Table 3

Validated goat CNVRs using semiquantitative fluorescent multiplex-PCR (SQF-PCR)

CNVR no.

Chromosome

BTA coordinates (Btau_4.0)

Target gene symbol (Ensembl entry no.)

Gain/Loss in aCGH analyses

Gain/Loss in SQF-PCR analyses


25

4

117225479-117366050

GIMAP1 (ENSBTAG00000001198)

Gain

Gain

61-62

10

23334056-23640961

23739149-24536154

(ENSBTAG00000027170)

Gain

Gain/Loss

761

13

64082600-641571862

ASIP (ENSBTAG00000034077)

Gain

Gain

761

13

64082600-641571862

AHCY (ENSBTAG00000018101)

Gain

Gain

90

17

10532314-11608092

NR3C2 (ENSBTAG00000027182)

Gain

Gain


1 Reported in [22].

2 Coordinates of the BTA13 of the UMD 2.0 Bos taurus genome assembly.

Fontanesi et al. BMC Genomics 2010 11:639   doi:10.1186/1471-2164-11-639

Open Data