Table 2

Comparison between this and other similar CNV studies using aCGH in mammalian and avian species.

Species

No. of individuals

aCGH platforms

Mean probe spacing (kb)

Total no. of CNVs

Mean no. of CNVs per individual

Total no. of CNVRs

CNVR mean size (kb)

References


Goat

9

385 k oligo aCGH

6.3

161

17.9

127

90.3

This study

Cattle

90

385 k oligo aCGH

~6

1,041

11.6

177

158.6

[51]

Cattle

20

6.3 million oligo aCGH

0.4

-

-

304

72.0

[52]

Human

270

BAC aCGH2

-

-

-

913

228.0

[28]

Human

40

42 million oligo aCGH

0.06

51,997

1300

-

2.96

[34]

Chimpanzee

20

BAC aCGH2

-

355

17.8

-

-

[35]

Macaque

9

385 k oligo aCGH

6.5

214

21.4

123

101.2

[37]

Dog

9

385 k oligo aCGH

4.73

155

17.2

60

309.5

[45]

Mouse

211

385 k oligo aCGH

~5

80

2-385

-

271.5

[39]

Mouse

201

2.1 million oligo aCGH

1

10,681

26.4-48.35

3,359

64.0

[54]

Rat

3

385 k oligo aCGH

~54

33

11

33

256.0

[43]

Chicken

10

385 k oligo aCGH

2.6

96

9.6

-

166.7

[78]


1 No. of strains (2-6 individuals per strain).

2 Whole Genome TilePath array comprising 26,574 large insert clones.

3 Median probe spacing.

4 Considering nonrepetitive parts of the genome.

5 Depending on the strain.

6 Median size.

Fontanesi et al. BMC Genomics 2010 11:639   doi:10.1186/1471-2164-11-639

Open Data