Table 4

List of European eel contigs putatively including a microRNA.

European eel contig

miRNA

Species


eu2_c1597

sme-mir-2175

Major

Schmidtea mediterranea

eu2_c1626

ptr-mir-1282-2

Major

Pan troglodytes

eu2_c1815

mmu-mir-203

Major

Mus musculus

eu2_c1886

mmu-mir-2142

Major

Mus musculus

eu2_c1924

mmu-mir-682

Major

Mus musculus

eu_c793

mml-mir-297

Major

Macaca mulatta

eu_c2050

gga-mir-1814

Major

Gallus gallus

eu_c2515

sko-mir-252b

Major

Saccoglossus kowalevskii

eu_c3632

mmu-mir-466d

Minor

Mus musculus

eu_c4382

mmu-mir-1192

Major

Mus musculus

eu_c5018

sko-mir-252b

Major

Saccoglossus kowalevskii

eu_c5414

sme-mir-756

Minor

Schmidtea mediterranea

eu_c6355

mdo-let-7d

Major

Monodelphis domestica

eu_c6415

sme-mir-87d

Major

Schmidtea mediterranea

eu_c7274

mmu-mir-466i

Major

Mus musculus

eu_c7409

bta-mir-220e

Major

Bos taurus

eu_c7978

mmu-mir-1937a

Major

Mus musculus

eu_c8918

ptr-mir-297

Major

Pan troglodytes

eu_c9238

mml-mir-298

Major

Macaca mulatta

eu_c9980

mmu-mir-1192

Major

Mus musculus

eu_c10632

mmu-mir-2142

Major

Mus musculus

eu_c11528

dgr-mir-308

Major

Drosophila grimshawi

eu_c11553

rno-mir-297

Major

Rattus norvegicus

eu_c12746

hsa-mir-522

Major

Homo sapiens

eu_c14091

hsa-mir-224

Minor

Homo sapiens

eu_c14597

mmu-mir-1903

Major

Mus musculus

eu_c14993

mmu-mir-2142

Major

Mus musculus

eu_c16240

bta-mir-2444

Major

Bos taurus

eu_c17072

mmu-mir-669i

Major

Mus musculus

eu_c17332

rno-mir-124-2

Major

Rattus norvegicus

eu_c17397

hsa-mir-297

Major

Homo sapiens

eu_c17444

dan-mir-92a

Major

Drosophila ananassae

eu_c18441

dre-mir-107b

Major

Danio rerio

eu_c19859

mmu-mir-674

Major

Mus musculus

eu_c20136

dan-mir-289

Major

Drosophila ananassae


Contigs were selected when part of their sequence is highly similar to a known Metazoan hairpin microRNA precursor. For each hairpin sequence, we also considered if the regions aligned with the hairpin sequence overlap the major or the minor mature sequence position.

Coppe et al. BMC Genomics 2010 11:635   doi:10.1186/1471-2164-11-635

Open Data