Table 1

Statistics describing the distributions of different properties of contig sequences.

264,866 reads

Min.

1st Q

Median

Mean

3rd Q

Max.


(A) 28,459 contigs

Length

40

279

409

455.2

565

2109


Number of reads

1

2

4

9.3

10

436


Average coverage

1.000

1.910

2.990

4.574

5.460

258.700


Average quality

13

34

38

41.66

49

83


(B) 19,631 contigs

Length

200

355

452

530.6

652

2109


Average quality

30

35

39

44.8

53

90


GC content

21.86

36.72

41.06

41.44

45.93

67.94


Properties of contig sequences (A) obtained by the first run of assembly and (B) included in the final set representing the European eel transcriptome.

Coppe et al. BMC Genomics 2010 11:635   doi:10.1186/1471-2164-11-635

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