Table 2

Overview of the annotation results.

Level 1 annotations

Number of proteins (%)


Proteins with homologs

7,353 (100%)

Pfam-A domains

4,767 (65%)

Gene Ontology

5,949 (81%)

GO Biological Process

5,072 (69%)

GO Cellular Component

4,530 (62%)

GO Molecular function

5,601 (76%)

Text mining definition

4,611 (63%)

Enzyme classification

1,243 (17%)

EC level 4 (X.X.X.X)

1,180 (16%)

Annotated proteins

6,252 (85%)


Level 2 annotations

Number of networks


KEGG pathways

345

Mapped pathways

202

Coverage > 50%

82

STRING subnetworks

385

Mapped subnetworks

264

Coverage > 50%

63


Gagnière et al. BMC Genomics 2010 11:634   doi:10.1186/1471-2164-11-634

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