Table 1

Summary of A. pompejan a cDNA libraries and assemblies

CloneMiner

Oligo-capping

Global assembly


Whole animal

Pygidium

Ventral tissue

Gills


Initial chromatograms

20,549

36,648

16,411

26,569

100,177

Clean sequences

19,739 (96%)

25,419 (69%)

12,871 (78%)

18,105 (68%)

76,134 (76%)

3' poly(A) (%)

1,599 (8%)

3,156 (12%)

5,465 (43%)

1,467 (8%)

11,687 (15%)

Mean length (bp)

633

610

720

776

674

Unigenes after assembly

5,425

8,682

2,831

3,760

15,858

Contigs

1,365

2,327

917

1,193

4,993

Singletons

4,060

6,355

1,914

2,567

10,865

Contig mean length (bp)

993

951

852

931

1,017


Gagnière et al. BMC Genomics 2010 11:634   doi:10.1186/1471-2164-11-634

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