Table 2

List of AIG1-like family members

GenBank Accession no. Gene

GenBank Accession no. Protein

Size aa

G1

G2

G3

C1

C2

C3

Cc** (position aa)

TM*** (position aa)

Real-time PCR data (x-fold)


Cell line A

Cell line B


A > B


1*

XM_643035

XP_648127

364

+

+

+

+

+

+

12.5


A < B


2

XM_648725

XP_653817

335

+

+

+

+

+

+

307 - 324

100.00


3*

XM_643009

XP_648101

364

+

+

+

+

+

+

100.00


4*

XM_648115

XP_653207

80

-

-

-

-

-

-

Th**** 50%: 14 - 24

100.00


5*

XM_643380

XP_648472

400

+

+

+

+

+

+

Th 50%:

150 - 175

262 - 265

327 - 350

372 - 393

20.00


6*

XM_643637

XP_648729

414

+

+

+

+

+

+

Th 50%:

152 - 174

203 - 265

334 - 360

386 - 406

20.00


7

XM_643379

XP_648471

308

+

+

+

+

+

+

284 - 305

16.67


8

XM_644114

XP_649206

309

+

+

+

+

+

+

285 - 306

12.50


9

XM_642923

XP_648015

306

+

+

+

+

+

+

283 - 305

11.11


10*

XM_645021

XP_650113

364

+

+

+

+

+

+

11.11


11

XM_643798

XP_648890

247

-

-

-

+

+

+

211 - 232

10.00


12*

XM_649824

XP_654916

362

+

+

+

+

+

+

10.00


13*

XM_648140

XP_653232

359

+

+

+

+

+

+

Th 90%:

221 - 235

5.56


14*

XM_645223

XP_650315

407

+

+

+

+

+

+

Th 90%:

302 - 313

324 - 345

351 - 369

4.76


15

XM_643164

XP_648256

304

+

+

+

+

+

+

3.57


16*

XM_643099

XP_648191

180

+

+

+

+

+

-

2.70


17

XM_643163

XP_648255

324

+

+

+

+

+

+

2.94


18

XM_643194

XP_648286

314

+

+

+

+

+

+

290 - 311

2.63


19

XM_643240

XP_648332

294

+

+

+

+

+

+

2.63


A = B


20*

XM_643464

XP_648556

304

+

+

+

+

+

+

1.25


21*

XM_643462

XP_648554

289

+

+

+

+

+

+

1.22


22*

XM_642922

XP_648014

403

+

+

+

+

+

+

288 - 309

315 - 341

352 - 374

1.12


23

XM_643102

XM_001914071

XP_648194

XP_001914106

303

+

+

+

+

+

+

Th 90%:

227 - 251

1.06


24*

XM_642959

XP_648051

291

+

+

+

+

+

+

1.04


25

XM_643063

XP_648155

386

+

+

+

+

+

+

Th 90%:

148 - 167

286 - 313

316 - 341

348 - 372

1.92


26

XM_643097

XP_648189

298

+

+

+

+

+

+

1.89


27

XM_644113

XP_649205

198

+

-

+

+

+

+

1.79


28

XM_644115

XP_649207

383

+

+

+

+

+

+

Th 90%:

194 - 208

211 - 217

287 - 308

310 - 335

341 - 369

1.67


29

XM_643463

XP_648555

319

+

+

+

+

+

+

1.64


30*

XM_643100

XP_648192

328

+

-

+

+

+

+

Th 50%:

149 - 166

1.61


31

XM_643195

XP_648287

367

+

+

+

+

+

+

Th 90%:

150 - 169

196 - 233

286 - 313

315 - 336

341 - 365

1.54


32

XM_643795

XP_648887

315

+

-

+

+

+

+

Th 90%:

153 - 166

1.30


33

XM_643721

XP_648813

291

+

+

+

+

+

+

Th 50%:

195 - 206

1.27


34

XM_648158

XP_653250

178

+

+

+

+

+

-

1.01


n.d.


35

XM_643797

XP_648889

287

+

+

+

+

+

+


36

XM_643634

XP_648726

290

+

+

+

+

+

+


37

XM_001914268

XP_001914303

298

+

+

+

+

+

+


38

XM_643632

XP_648724

308

+

+

+

+

+

+

286 - 305


39

XM_001914588

XP_001914623

203

+

+

+

+

+

+


40

XM_001914580

XP_001914615

285

-

+

+

+

+

+

260 - 282


41

XM_001914532

XP_001914567

145

+

+

+

+

+

-


42

XM_643239

XP_648331

163

+

+

+

-

-

+


43

XM_001914473

XP_001914508

179

+

+

+

+

+

-


44

XM_001914282

XP_001914317

188

-

-

+

+

+

+


45*

XM_643794

XP_648886

250

+

+

+

+

+

+


46*

XM_643014

XP_648106

290

-

-

-

+

+

+


47*

XM_643378

XP_648470

289

+

+

+

+

+

+

Th 50%:

212 - 241


GTP-binding motifs: G1 = GxxxxGKS; G2 = SET; G3 = VIDTPGL; G4 and G5 = not present; Conserved domains: C1 = GL/I/VQG/AIV/II/LV/TL/MN; C2 = HVCIVWTKC; C3 = RSExEIERLI; n.d.: not determined; *Removed from NCBI; **Prediction of coiled-coil domains using Marcoil1.0 http://www.isrec.isb-sib.ch/webmarcoil/webmarcoilC1.html webcite[28]

***Prediction of transmembrane domains (TM) using TMHMM Server http://www.cbs.dtu.dk/services/TMHMM webcite

****Treshold (Th)

Biller et al. BMC Genomics 2010 11:63   doi:10.1186/1471-2164-11-63

Open Data