Table 1

Indels detected in twelve natural isolates of C. elegans.

Strain

Deletions

Amplifications

Median Indel Length

Mean Indel Length

Maximum Indel Length

Deleted Genesa

Deleted Pseudogenesa

Location


AB1

48

9

2481

7564

75120

147

26

Adelaide, Australia

CB3191

1

0

1262

1262

1262

1

0

Altadena, California, USA

CB4853

63

10

2460

8651

109400

237

16

Altadena, California, USA

CB4854

49

7

2240

6201

68860

122

20

Altadena, California, USA

CB4856

172

10

2885

7279

103200

517

91

Oahu, Hawaii, USA

CB4858

66

7

2481

7502

109400

211

16

Pasadena, California, USA

JU258

140

10

3271

12390

185700

671

117

Ribeiro Frio, Madeira, Portugal

JU263

68

6

2680

5080

68860

145

18

Le Blanc, France

JU322

66

12

2484

6270

70040

174

15

Merlet, France

KR314

124

6

2689

8674

118100

417

77

Vancouver, British Columbia, Canada

MY2

78

5

3485

10080

184100

301

44

Roxel, Munster, Germany

RW7000

8

2

2593

22600

116900

38

2

Bergerac, France

Overall

883b

84b

2700

8476

185700

1136c

216c

NA


a The number of deleted genes and pseudogenes includes those either wholly or partially deleted. b The overall number of deletions and amplifications is the sum of those found in all strains, so indels found in more than one strain were counted multiple times. c The overall number of deleted genes and pseudogenes is the number deleted in at least one of the 12 strains (genes deleted in more than one strain were counted only once).

Maydan et al. BMC Genomics 2010 11:62   doi:10.1186/1471-2164-11-62

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