Table 1 |
||||||||||
|
Northern data and sequence conservation scores of 117 rhesus monkey ncRNAs. |
||||||||||
|
ncRNA Name |
Clone Number |
Length |
Probe ID |
Northern data |
Conservation score |
Consistance |
||||
|
Chicken |
Mouse |
Human |
Chicken |
Mouse |
Human |
|||||
|
|
||||||||||
|
Group 1 40 ncRNAs detected by 18 ncRNA probes |
||||||||||
|
7SK |
9 |
332 |
MT721 |
yes |
yes |
yes |
0.98 |
1 |
1 |
Y |
|
RNaseP_nuc |
1 |
340 |
MP733 |
yes |
yes |
yes |
0.12 |
0.36 |
1 |
Y |
|
SNORA61 |
1 |
131 |
MP2422 |
yes |
yes |
yes |
0.42 |
0.36 |
1 |
Y |
|
SNORA66 |
4 |
131 |
MP405 |
yes |
yes |
yes |
0.69 |
0.83 |
1 |
Y |
|
SNORA81 |
26 |
179 |
MP284 |
yes |
yes |
yes |
0.42 |
0.99 |
1 |
Y |
|
SNORD94 |
5 |
135 |
MP141 |
yes |
yes |
yes |
0.64 |
1 |
1 |
Y |
|
7SLa |
1 |
299 |
MP477 |
yes |
yes |
yes |
0.97 |
1 |
1 |
Y |
|
7SLb |
2 |
300 |
MP477 |
yes |
yes |
yes |
0.97 |
1 |
1 |
Y |
|
U1-1 |
14 |
164 |
MT369 |
yes |
yes |
yes |
1 |
1 |
1 |
Y |
|
U1-2 |
17 |
166 |
MT369 |
yes |
yes |
yes |
1 |
1 |
1 |
Y |
|
U1-3 |
23 |
166 |
MT369 |
yes |
yes |
yes |
1 |
1 |
1 |
Y |
|
U12 |
12 |
150 |
MT305 |
yes |
yes |
yes |
0.87 |
1 |
1 |
Y |
|
U2-1 |
5 |
184 |
MP76 |
no |
yes |
yes |
0.99 |
1 |
1 |
Y |
|
U2-2 |
21 |
188 |
MP76 |
no |
yes |
yes |
0.99 |
1 |
1 |
Y |
|
U3a |
12 |
148 |
MT42 |
yes |
yes |
yes |
0.70 |
0.81 |
1 |
Y |
|
U3b |
9 |
217 |
MT42 |
yes |
yes |
yes |
0.72 |
0.8 |
1 |
Y |
|
U3c |
7 |
218 |
MT42 |
yes |
yes |
yes |
0.71 |
0.82 |
1 |
Y |
|
U3d |
10 |
218 |
MT42 |
yes |
yes |
yes |
0.70 |
0.80 |
1 |
Y |
|
U3e |
8 |
219 |
MT42 |
yes |
yes |
yes |
0.73 |
0.82 |
1 |
Y |
|
U3f |
6 |
221 |
MT42 |
yes |
yes |
yes |
0.70 |
0.81 |
1 |
Y |
|
U3g |
6 |
216 |
MT42 |
yes |
yes |
yes |
0.71 |
0.83 |
1 |
Y |
|
U3h |
9 |
216 |
MT42 |
yes |
yes |
yes |
0.72 |
0.81 |
1 |
Y |
|
U3i |
7 |
216 |
MT42 |
yes |
yes |
yes |
0.70 |
0.80 |
1 |
Y |
|
U3j |
2 |
216 |
MT42 |
yes |
yes |
yes |
0.73 |
0.82 |
1 |
Y |
|
U3k |
20 |
217 |
MT42 |
yes |
yes |
yes |
0.71 |
0.81 |
1 |
Y |
|
U3l |
5 |
217 |
MT42 |
yes |
yes |
yes |
0.73 |
0.80 |
1 |
Y |
|
U3m |
7 |
217 |
MT42 |
yes |
yes |
yes |
0.72 |
0.84 |
1 |
Y |
|
U3n |
6 |
217 |
MT42 |
yes |
yes |
yes |
0.70 |
0.83 |
1 |
Y |
|
U4 |
10 |
146 |
MT365 |
yes |
yes |
yes |
0.99 |
0.99 |
1 |
Y |
|
U5-1 |
1 |
97 |
MP235 |
yes |
yes |
yes |
0.70 |
0.99 |
0.88 |
Y |
|
U5-2 |
6 |
118 |
MP235 |
yes |
yes |
yes |
0.75 |
0.99 |
0.88 |
Y |
|
U5-3 |
9 |
121 |
MP235 |
yes |
yes |
yes |
0.74 |
0.99 |
0.88 |
Y |
|
U5-4 |
8 |
121 |
MP235 |
yes |
yes |
yes |
0.73 |
0.99 |
0.88 |
Y |
|
U5-5 |
6 |
124 |
MP235 |
yes |
yes |
yes |
0.78 |
0.99 |
0.88 |
Y |
|
U6-1 |
35 |
89 |
MT44 |
yes |
yes |
yes |
1 |
1 |
1 |
Y |
|
U6-2 |
48 |
104 |
MT44 |
yes |
yes |
yes |
1 |
1 |
1 |
Y |
|
U6atac |
43 |
127 |
MT65 |
yes |
yes |
yes |
0.96 |
0.96 |
1 |
Y |
|
unclassified 2 |
1 |
51 |
MT4702 |
yes |
yes |
yes |
0.94 |
0.94 |
0.94 |
Y |
|
Y5 |
30 |
102 |
MP281 |
yes |
yes |
yes |
0.62 |
1 |
1 |
Y |
|
Y6 |
81 |
112 |
MP91 |
yes |
yes |
yes |
1 |
1 |
1 |
Y |
|
Group 2 51 ncRNAs detected by 49 ncRNA probes |
||||||||||
|
RNase_MRP |
1 |
146 |
MP690 |
no |
yes |
yes |
0.15 |
0.39 |
1 |
Y |
|
SCARNA11 |
2 |
144 |
MP66 |
no |
yes |
yes |
0.16 |
0.85 |
1 |
Y |
|
SCARNA15 |
2 |
127 |
MP77 |
no |
yes |
yes |
0.22 |
0.99 |
1 |
Y |
|
SCARNA25 |
3 |
142 |
MP407 |
no |
yes |
yes |
0.17 |
1 |
0.98 |
Y |
|
SCARNA4 |
3 |
128 |
MP400 |
no |
yes |
yes |
0.23 |
0.98 |
1 |
Y |
|
SNORA11 |
1 |
115 |
MP4400 |
no |
yes |
yes |
0.20 |
0.51 |
1 |
Y |
|
SNORA13 |
1 |
135 |
MP243 |
no |
yes |
yes |
0.19 |
0.99 |
1 |
Y |
|
SNORA14 |
2 |
132 |
MP227 |
no |
yes |
yes |
0.20 |
0.99 |
1 |
Y |
|
SNORA15 |
2 |
138 |
MP236 |
no |
yes |
yes |
0.20 |
0.46 |
0.98 |
Y |
|
SNORA17 |
2 |
134 |
MP695 |
no |
yes |
yes |
0.16 |
0.87 |
1 |
Y |
|
SNORA18 |
5 |
133 |
MP17 |
no |
yes |
yes |
0.23 |
0.98 |
1 |
Y |
|
SNORA2 |
1 |
137 |
MP4598 |
no |
yes |
yes |
0.17 |
0.99 |
1 |
Y |
|
SNORA23 |
2 |
189 |
MP268 |
no |
yes |
yes |
0.23 |
0.94 |
1 |
Y |
|
SNORA24 |
2 |
130 |
MP252 |
no |
yes |
yes |
0.41 |
1 |
1 |
Y |
|
SNORA28 |
3 |
129 |
MP306 |
no |
yes |
yes |
0.31 |
0.92 |
1 |
Y |
|
SNORA36a |
3 |
132 |
MP207 |
no |
yes |
yes |
0.42 |
0.98 |
1 |
Y |
|
SNORA36b |
2 |
132 |
MP207 |
no |
yes |
yes |
0.45 |
0.52 |
1 |
Y |
|
SNORA4 |
6 |
140 |
MP374 |
no |
yes |
yes |
0.17 |
0.44 |
1 |
Y |
|
SNORA41 |
1 |
131 |
MP4579 |
no |
yes |
yes |
0.20 |
0.56 |
0.98 |
Y |
|
SNORA42 |
1 |
139 |
MP4011 |
no |
yes |
yes |
0.22 |
0.86 |
1 |
Y |
|
SNORA49 |
2 |
138 |
MP427 |
no |
yes |
yes |
0.20 |
0.88 |
1 |
Y |
|
SNORA5 |
3 |
135 |
MP4812 |
no |
yes |
yes |
0.45 |
0.84 |
1 |
Y |
|
SNORA53 |
2 |
248 |
MP750 |
no |
yes |
yes |
0.29 |
1 |
1 |
Y |
|
SNORA54 |
2 |
124 |
MP319 |
no |
yes |
yes |
0.24 |
1 |
1 |
Y |
|
SNORA58 |
4 |
137 |
MP4121 |
no |
yes |
yes |
0.21 |
0.52 |
1 |
Y |
|
SNORA62 |
8 |
150 |
MP86 |
no |
yes |
yes |
0.17 |
1 |
0.99 |
Y |
|
SNORA63 |
13 |
135 |
MP32 |
no |
yes |
yes |
0.19 |
0.99 |
1 |
Y |
|
SNORA7 |
1 |
140 |
MP4777 |
no |
yes |
yes |
0.20 |
0.96 |
1 |
Y |
|
SNORA70 |
1 |
135 |
MP4769 |
no |
yes |
yes |
0.23 |
0.70 |
1 |
Y |
|
SNORA71 |
3 |
138 |
MP241 |
no |
yes |
yes |
0.19 |
0.83 |
1 |
Y |
|
SNORA72 |
5 |
132 |
MP356 |
no |
yes |
yes |
0.19 |
0.96 |
1 |
Y |
|
SNORA74a |
2 |
134 |
MP2697 |
no |
yes |
yes |
0.12 |
1 |
1 |
Y |
|
SNORA74b |
2 |
203 |
MP4370 |
no |
yes |
yes |
0.12 |
1 |
1 |
Y |
|
SNORD13 |
23 |
104 |
MT370 |
no |
yes |
yes |
0.21 |
0.74 |
1 |
Y |
|
SNORD15 |
2 |
142 |
MP4 |
no |
yes |
yes |
0.23 |
1 |
1 |
Y |
|
SNORD17a |
2 |
250 |
MP20 |
no |
yes |
yes |
0.12 |
1 |
0.99 |
Y |
|
SNORD17b |
6 |
257 |
MP20 |
no |
yes |
yes |
0.12 |
1 |
0.99 |
Y |
|
SNORD22 |
1 |
126 |
MP4712 |
no |
yes |
yes |
0.21 |
1 |
1 |
Y |
|
SNORD46 |
3 |
101 |
MP329 |
no |
yes |
yes |
0.26 |
0.96 |
0.96 |
Y |
|
SNORD67 |
1 |
104 |
MP4243 |
no |
yes |
yes |
0.45 |
0.98 |
0.98 |
Y |
|
snoU6-53 |
3 |
110 |
MP277 |
no |
yes |
yes |
0.24 |
0.98 |
1 |
Y |
|
U11 |
4 |
136 |
MP1393 |
no |
yes |
yes |
0.29 |
1 |
1 |
Y |
|
U4atac |
35 |
131 |
MT4 |
no |
yes |
yes |
0.19 |
0.98 |
1 |
Y |
|
unclassified 6 |
1 |
137 |
MP2665 |
no |
yes |
yes |
0.18 |
0.26 |
0.99 |
Y |
|
unclassified 7 |
2 |
143 |
MP232 |
no |
yes |
yes |
0.17 |
0.99 |
1 |
Y |
|
Vault RNA |
2 |
89 |
MP331 |
no |
yes |
yes |
0.21 |
0.25 |
0.53 |
Y |
|
SNORD116 |
3 |
90 |
MT4173 |
no |
no |
yes |
0.28 |
0.77 |
1 |
Y |
|
SNORA31 |
7 |
128 |
MP312 |
no |
yes |
yes |
0.66 |
1 |
1 |
N |
|
SNORA73 |
1 |
119 |
MP4480 |
no |
yes |
yes |
0.97 |
0.97 |
0.96 |
N |
|
SNORA8 |
1 |
140 |
MP4084 |
no |
yes |
yes |
0.69 |
0.99 |
1 |
N |
|
SNORD16 |
1 |
94 |
MT2039 |
no |
yes |
yes |
0.85 |
1 |
1 |
N |
|
Group 3 16 ncRNAs detected by 14 probes |
||||||||||
|
SNORA25 |
2 |
133 |
MP3076 |
no |
no |
yes |
0.18 |
0.56 |
0.99 |
Y |
|
SNORA64 |
1 |
132 |
MP4716 |
no |
no |
yes |
0.18 |
0.21 |
1 |
Y |
|
SNORA68 |
1 |
133 |
MP2580 |
no |
no |
yes |
0.18 |
0.32 |
1 |
Y |
|
SNORD24 |
1 |
71 |
MT325 |
no |
no |
yes |
0.32 |
0.32 |
1 |
Y |
|
U8 |
8 |
137 |
MT180 |
no |
no |
yes |
0.17 |
0.46 |
1 |
Y |
|
unclassified 8 |
1 |
153 |
MP472 |
no |
no |
yes |
0.16 |
0.18 |
1 |
Y |
|
Y1 |
1 |
77 |
MP727 |
no |
no |
yes |
0.27 |
0.51 |
0.92 |
Y |
|
Y2 |
4 |
90 |
MP727 |
no |
no |
yes |
0.26 |
0.49 |
0.92 |
Y |
|
Y3 |
34 |
90 |
MP727 |
no |
no |
yes |
0.25 |
0.53 |
0.92 |
Y |
|
Y4 |
25 |
96 |
MT274 |
no |
no |
yes |
0.27 |
0.27 |
1 |
Y |
|
SNORA19 |
4 |
132 |
MP4158 |
no |
no |
yes |
0.40 |
0.99 |
1 |
N |
|
SNORA27 |
3 |
128 |
MP464 |
no |
no |
yes |
0.22 |
0.98 |
1 |
N |
|
SNORA40 |
1 |
130 |
MP4587 |
no |
no |
yes |
0.22 |
0.77 |
1 |
N |
|
SNORA43 |
1 |
134 |
MP2188 |
no |
no |
yes |
0.16 |
0.76 |
1 |
N |
|
SNORA76 |
1 |
135 |
MP1373 |
no |
no |
yes |
0.18 |
0.93 |
0.99 |
N |
|
snosnR60_Z15 |
1 |
68 |
MT2333 |
no |
no |
yes |
1 |
1 |
1 |
N |
|
Group 4 8 ncRNAs detected by 8 probes |
||||||||||
|
SNORA20 |
2 |
133 |
MP4330 |
no |
no |
no |
0.18 |
0.18 |
1 |
N |
|
SNORD26 |
1 |
139 |
MP2208 |
no |
no |
no |
0.20 |
0.97 |
0.98 |
N |
|
SNORD27 |
2 |
69 |
MP299 |
no |
no |
no |
0.36 |
0.72 |
1 |
N |
|
SNORD87 |
1 |
77 |
MP4391 |
no |
no |
no |
0.31 |
0.48 |
1 |
N |
|
unclassified 1 |
7 |
51 |
MT3898 |
no |
no |
no |
0.63 |
1 |
1 |
N |
|
unclassified 3 |
2 |
52 |
MT3338 |
no |
no |
no |
** |
** |
** |
** |
|
unclassified 4 |
1 |
67 |
MP2207 |
no |
no |
no |
0.32 |
0.35 |
0.65 |
N |
|
unclassified 5 |
2 |
75 |
MP2233 |
no |
no |
no |
0.33 |
0.55 |
0.99 |
N |
|
Group 5 Only one ncRNA belongs to this group |
||||||||||
|
SNORD45 |
1 |
77 |
MP2242 |
no |
yes |
no |
0.34 |
1 |
1 |
N |
|
Group 6 Only one ncRNA belongs to this group |
||||||||||
|
SNORA50 |
3 |
136 |
MP2895 |
yes |
no |
yes |
0.98 |
1 |
1 |
N |
|
|
||||||||||
|
** Without genomic loci in the database of the current genomic version. |
||||||||||
|
Zhang et al. BMC Genomics 2010 11:61 doi:10.1186/1471-2164-11-61 |
||||||||||
