Table 1

Northern data and sequence conservation scores of 117 rhesus monkey ncRNAs.

ncRNA Name

Clone Number

Length

Probe ID

Northern data

Conservation score

Consistance

Chicken

Mouse

Human

Chicken

Mouse

Human


Group 1 40 ncRNAs detected by 18 ncRNA probes

7SK

9

332

MT721

yes

yes

yes

0.98

1

1

Y

RNaseP_nuc

1

340

MP733

yes

yes

yes

0.12

0.36

1

Y

SNORA61

1

131

MP2422

yes

yes

yes

0.42

0.36

1

Y

SNORA66

4

131

MP405

yes

yes

yes

0.69

0.83

1

Y

SNORA81

26

179

MP284

yes

yes

yes

0.42

0.99

1

Y

SNORD94

5

135

MP141

yes

yes

yes

0.64

1

1

Y

7SLa

1

299

MP477

yes

yes

yes

0.97

1

1

Y

7SLb

2

300

MP477

yes

yes

yes

0.97

1

1

Y

U1-1

14

164

MT369

yes

yes

yes

1

1

1

Y

U1-2

17

166

MT369

yes

yes

yes

1

1

1

Y

U1-3

23

166

MT369

yes

yes

yes

1

1

1

Y

U12

12

150

MT305

yes

yes

yes

0.87

1

1

Y

U2-1

5

184

MP76

no

yes

yes

0.99

1

1

Y

U2-2

21

188

MP76

no

yes

yes

0.99

1

1

Y

U3a

12

148

MT42

yes

yes

yes

0.70

0.81

1

Y

U3b

9

217

MT42

yes

yes

yes

0.72

0.8

1

Y

U3c

7

218

MT42

yes

yes

yes

0.71

0.82

1

Y

U3d

10

218

MT42

yes

yes

yes

0.70

0.80

1

Y

U3e

8

219

MT42

yes

yes

yes

0.73

0.82

1

Y

U3f

6

221

MT42

yes

yes

yes

0.70

0.81

1

Y

U3g

6

216

MT42

yes

yes

yes

0.71

0.83

1

Y

U3h

9

216

MT42

yes

yes

yes

0.72

0.81

1

Y

U3i

7

216

MT42

yes

yes

yes

0.70

0.80

1

Y

U3j

2

216

MT42

yes

yes

yes

0.73

0.82

1

Y

U3k

20

217

MT42

yes

yes

yes

0.71

0.81

1

Y

U3l

5

217

MT42

yes

yes

yes

0.73

0.80

1

Y

U3m

7

217

MT42

yes

yes

yes

0.72

0.84

1

Y

U3n

6

217

MT42

yes

yes

yes

0.70

0.83

1

Y

U4

10

146

MT365

yes

yes

yes

0.99

0.99

1

Y

U5-1

1

97

MP235

yes

yes

yes

0.70

0.99

0.88

Y

U5-2

6

118

MP235

yes

yes

yes

0.75

0.99

0.88

Y

U5-3

9

121

MP235

yes

yes

yes

0.74

0.99

0.88

Y

U5-4

8

121

MP235

yes

yes

yes

0.73

0.99

0.88

Y

U5-5

6

124

MP235

yes

yes

yes

0.78

0.99

0.88

Y

U6-1

35

89

MT44

yes

yes

yes

1

1

1

Y

U6-2

48

104

MT44

yes

yes

yes

1

1

1

Y

U6atac

43

127

MT65

yes

yes

yes

0.96

0.96

1

Y

unclassified 2

1

51

MT4702

yes

yes

yes

0.94

0.94

0.94

Y

Y5

30

102

MP281

yes

yes

yes

0.62

1

1

Y

Y6

81

112

MP91

yes

yes

yes

1

1

1

Y

Group 2 51 ncRNAs detected by 49 ncRNA probes

RNase_MRP

1

146

MP690

no

yes

yes

0.15

0.39

1

Y

SCARNA11

2

144

MP66

no

yes

yes

0.16

0.85

1

Y

SCARNA15

2

127

MP77

no

yes

yes

0.22

0.99

1

Y

SCARNA25

3

142

MP407

no

yes

yes

0.17

1

0.98

Y

SCARNA4

3

128

MP400

no

yes

yes

0.23

0.98

1

Y

SNORA11

1

115

MP4400

no

yes

yes

0.20

0.51

1

Y

SNORA13

1

135

MP243

no

yes

yes

0.19

0.99

1

Y

SNORA14

2

132

MP227

no

yes

yes

0.20

0.99

1

Y

SNORA15

2

138

MP236

no

yes

yes

0.20

0.46

0.98

Y

SNORA17

2

134

MP695

no

yes

yes

0.16

0.87

1

Y

SNORA18

5

133

MP17

no

yes

yes

0.23

0.98

1

Y

SNORA2

1

137

MP4598

no

yes

yes

0.17

0.99

1

Y

SNORA23

2

189

MP268

no

yes

yes

0.23

0.94

1

Y

SNORA24

2

130

MP252

no

yes

yes

0.41

1

1

Y

SNORA28

3

129

MP306

no

yes

yes

0.31

0.92

1

Y

SNORA36a

3

132

MP207

no

yes

yes

0.42

0.98

1

Y

SNORA36b

2

132

MP207

no

yes

yes

0.45

0.52

1

Y

SNORA4

6

140

MP374

no

yes

yes

0.17

0.44

1

Y

SNORA41

1

131

MP4579

no

yes

yes

0.20

0.56

0.98

Y

SNORA42

1

139

MP4011

no

yes

yes

0.22

0.86

1

Y

SNORA49

2

138

MP427

no

yes

yes

0.20

0.88

1

Y

SNORA5

3

135

MP4812

no

yes

yes

0.45

0.84

1

Y

SNORA53

2

248

MP750

no

yes

yes

0.29

1

1

Y

SNORA54

2

124

MP319

no

yes

yes

0.24

1

1

Y

SNORA58

4

137

MP4121

no

yes

yes

0.21

0.52

1

Y

SNORA62

8

150

MP86

no

yes

yes

0.17

1

0.99

Y

SNORA63

13

135

MP32

no

yes

yes

0.19

0.99

1

Y

SNORA7

1

140

MP4777

no

yes

yes

0.20

0.96

1

Y

SNORA70

1

135

MP4769

no

yes

yes

0.23

0.70

1

Y

SNORA71

3

138

MP241

no

yes

yes

0.19

0.83

1

Y

SNORA72

5

132

MP356

no

yes

yes

0.19

0.96

1

Y

SNORA74a

2

134

MP2697

no

yes

yes

0.12

1

1

Y

SNORA74b

2

203

MP4370

no

yes

yes

0.12

1

1

Y

SNORD13

23

104

MT370

no

yes

yes

0.21

0.74

1

Y

SNORD15

2

142

MP4

no

yes

yes

0.23

1

1

Y

SNORD17a

2

250

MP20

no

yes

yes

0.12

1

0.99

Y

SNORD17b

6

257

MP20

no

yes

yes

0.12

1

0.99

Y

SNORD22

1

126

MP4712

no

yes

yes

0.21

1

1

Y

SNORD46

3

101

MP329

no

yes

yes

0.26

0.96

0.96

Y

SNORD67

1

104

MP4243

no

yes

yes

0.45

0.98

0.98

Y

snoU6-53

3

110

MP277

no

yes

yes

0.24

0.98

1

Y

U11

4

136

MP1393

no

yes

yes

0.29

1

1

Y

U4atac

35

131

MT4

no

yes

yes

0.19

0.98

1

Y

unclassified 6

1

137

MP2665

no

yes

yes

0.18

0.26

0.99

Y

unclassified 7

2

143

MP232

no

yes

yes

0.17

0.99

1

Y

Vault RNA

2

89

MP331

no

yes

yes

0.21

0.25

0.53

Y

SNORD116

3

90

MT4173

no

no

yes

0.28

0.77

1

Y

SNORA31

7

128

MP312

no

yes

yes

0.66

1

1

N

SNORA73

1

119

MP4480

no

yes

yes

0.97

0.97

0.96

N

SNORA8

1

140

MP4084

no

yes

yes

0.69

0.99

1

N

SNORD16

1

94

MT2039

no

yes

yes

0.85

1

1

N

Group 3 16 ncRNAs detected by 14 probes

SNORA25

2

133

MP3076

no

no

yes

0.18

0.56

0.99

Y

SNORA64

1

132

MP4716

no

no

yes

0.18

0.21

1

Y

SNORA68

1

133

MP2580

no

no

yes

0.18

0.32

1

Y

SNORD24

1

71

MT325

no

no

yes

0.32

0.32

1

Y

U8

8

137

MT180

no

no

yes

0.17

0.46

1

Y

unclassified 8

1

153

MP472

no

no

yes

0.16

0.18

1

Y

Y1

1

77

MP727

no

no

yes

0.27

0.51

0.92

Y

Y2

4

90

MP727

no

no

yes

0.26

0.49

0.92

Y

Y3

34

90

MP727

no

no

yes

0.25

0.53

0.92

Y

Y4

25

96

MT274

no

no

yes

0.27

0.27

1

Y

SNORA19

4

132

MP4158

no

no

yes

0.40

0.99

1

N

SNORA27

3

128

MP464

no

no

yes

0.22

0.98

1

N

SNORA40

1

130

MP4587

no

no

yes

0.22

0.77

1

N

SNORA43

1

134

MP2188

no

no

yes

0.16

0.76

1

N

SNORA76

1

135

MP1373

no

no

yes

0.18

0.93

0.99

N

snosnR60_Z15

1

68

MT2333

no

no

yes

1

1

1

N

Group 4 8 ncRNAs detected by 8 probes

SNORA20

2

133

MP4330

no

no

no

0.18

0.18

1

N

SNORD26

1

139

MP2208

no

no

no

0.20

0.97

0.98

N

SNORD27

2

69

MP299

no

no

no

0.36

0.72

1

N

SNORD87

1

77

MP4391

no

no

no

0.31

0.48

1

N

unclassified 1

7

51

MT3898

no

no

no

0.63

1

1

N

unclassified 3

2

52

MT3338

no

no

no

**

**

**

**

unclassified 4

1

67

MP2207

no

no

no

0.32

0.35

0.65

N

unclassified 5

2

75

MP2233

no

no

no

0.33

0.55

0.99

N

Group 5 Only one ncRNA belongs to this group

SNORD45

1

77

MP2242

no

yes

no

0.34

1

1

N

Group 6 Only one ncRNA belongs to this group

SNORA50

3

136

MP2895

yes

no

yes

0.98

1

1

N


** Without genomic loci in the database of the current genomic version.

Zhang et al. BMC Genomics 2010 11:61   doi:10.1186/1471-2164-11-61

Open Data