Table 1

List of transcription factors (TFs) affecting specific module genes at a threshold of false discovery rate (FDR) = 0.1 of enrichment compared with the rest of the network.

Module

TF

Raw p-value/FDR

TFBS/genes in module


Pink

Wt1

3e-05/0.00543

89/151

Black

LRH1

0.001/0.0972

32/152

Black

Pax-6

0.00057/0.0972

73/152

Blue

ZF5

0.00001/0.0019

248/482

Blue

Sp1

0.00097/0.0614

182/482

Blue

HIC1

0.00064/0.0608

60/482

Red

Sp1

0.0004/0.0366

87/206

Red

CP2

0.00016/0.02928

97/206

Turquoise

CETS1p54

2e-05/0.0039

419/1315


Iancu et al. BMC Genomics 2010 11:585   doi:10.1186/1471-2164-11-585

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