Table 5

BLAT hits to 1602 Litomosoides sigmodontis EST clusters

CAP3

CLC

MIRA

Newbler 2.3

Newbler 2.5

SeqMan


% of ESTs hit by BLAT

87.8

90.3

89.6

81.6*

89.6

90.8

(% of bases covered)

(78.2)

(80.0)

(80.1)

(71.3)*

(78.7)

(82.0)

% of ESTs hit by BLAT where each hit covered at least 80% of the target EST sequence

59.9

51.9

62.5

59.4

63.9

65.4

(% of bases covered)

(59.1)

(50.5)*

(61.1)

(59.4)

(63.7)

(64.3)


* indicates a value significantly lower than the others, using a Huber M-estimator.

Kumar and Blaxter BMC Genomics 2010 11:571   doi:10.1186/1471-2164-11-571

Open Data