Table 10

Alignments to 1602 EST clusters where > 80% of the EST was covered by a match, by pairs of assemblies merged using an OLC assembler

Assembly pair

% EST clusters hit

% EST bases covered


CLC

MIRA

65.4

65.1

MIRA

Newbler 2.5

65.4

65.3

MIRA

SeqMan

64.9

64.6

CLC

Newbler 2.5

64.7

64.6

Newbler 2.5

SeqMan

63.2

62.9

CAP3

Newbler 2.5

63.0

62.6

CAP3

CLC

62.9

62.4

CLC

SeqMan

62.9

62.5

CLC

Newbler 2.3

62.4

62.5

CAP3

MIRA

62.2

61.9

CAP3

SeqMan

61.7

61.3

MIRA

Newbler 2.3

61.7

61.9

Newbler 2.3

Newbler 2.5

61.4

61.5

Newbler 2.3

SeqMan

60.0

60.2

CAP3

Newbler 2.3

59.7

59.6


Kumar and Blaxter BMC Genomics 2010 11:571   doi:10.1186/1471-2164-11-571

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