Table 1

Assemblers previously used for de novo assembly of 454 pyrosequencing transcriptome projects

Assembler

Organism


Newbler

Arabidopsis thaliana [1,2]; Eucalyptus grandis [3]; Castanea dentata and Castanea mollissima [4]; Sarcophaga crassipalpis [5]; Acropora millepora [6]; Palomero toluqueño [7]; Eschscholzia californica and Persea americana [2]; Vitis vinifera [8]; Rhagoletis pomonella [9]; Heliconius spp. [10]; Euphydryas aurinia, Manduca sexta, Chrysomela tremulae, Papilio dardanus, Heliconius melpomene, Heliconius erato, and Melitaea cinxia [11]; Panax quinquefolius [12]; Sclerotium rolfsii [13]; Laternula elliptica [14]

CAP3

Zea mays [15,16]; Arabidopsis thaliana [1]; Ambystoma mexicanum [17]; Human breast cancer [18]; Artemisia annua [19]; Solanum arcanum [20]; Epimedium sagittatum [21]; Haemonchus contortus [22]; Laodelphax striatellus [23]; Coleochaete orbicularis and Spirogyra pratensis [24]; Bugula neritina [25];

MIRA

Centaurea solstitialis [26]; Chrysomela tremulae [27,11]; Pandinus imperator [28]; Zygaena filipendulae [29]; Manduca sexta [30,11]; Euphydryas aurinia, Papilio dardanus, Heliconius melpomene, Heliconius erato, and Melitaea cinxia [11];

TGICL

Pythium ultimum [31]; Zoarces viviparous [32]; Medicago truncatula [33]

SeqMan

Melitaea cinxia [34]; Cochliomyia hominivorax [35]; Pinus contorta [36]

stackPACK

Arabidopsis thaliana [1]


Kumar and Blaxter BMC Genomics 2010 11:571   doi:10.1186/1471-2164-11-571

Open Data