Table 3

Comparison between Mytibase and DeepSeaVent database

DeepSeaVent and Mytibase comparison

E-value

Bit-score

Matched proteins with InterPro annotation


10-5

90

5,261

10-5

120

4,120

10-5

200

1,923


Biological Process

GO:0008150

DeepSeaVent

DeepSeaVent

vs

Mytibase

Shared percentage


Cell killing

12

6

50.0

Immune system process

56

3

5.4

Death

14

2

14.3

Multicellular organismal process

39

6

15.4

Cellular component biogenesis

318

175

55.0

Cell wall organization or biogenesis

9

1

11.1


Cellular Component

GO:0005575


Virion

63

1

1.6

Macromolecular complex

1495

798

53.4

Virion part

63

1

1.6


Molecular Function

GO:0003674


Structural molecule activity

942

533

56.6

Transporter activity

570

101

17.7

Electron carrier activity

350

54

15.4

Enzyme regulator activity

161

22

13.7

Molecular transducer activity

110

6

5.5


The fixed E-value 10-5 was kept for three different bit-scores (90,120 and 200). The number of contigs with GO ontology assignments shared between both databases is shown together with respective shared percentage

Bettencourt et al. BMC Genomics 2010 11:559   doi:10.1186/1471-2164-11-559

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