Table 4

Selected cis-regulatory element present in the 1000 bp upstream of the AtPrx13, AtPrx30, and AtPrx55 genes and their frequency in all 73 class III peroxidase gene promoters obtained with PLACE database

Position in gene promoter


Motif

Sequence

Function

AtPrx13

AtPrx30

AtPrx55

Frequency (%)


ABRE

MACGYGB

abscisic acid responsiveness

251, 510(-)

n.f.

129

45

AGL2

NNWNCCA[W]4TRG[W]2AN

binding sequence of AGL2

10

n.f.

383(-)

3

ARFAT

TGTCTC

auxin response factor binding site

319

936

n.f.

34

ASF1

TGACG

activation of genes by auxin/salicylic acid

543

n.f.

n.f.

45

CARGAT

CC[W]6GG

found in MADS-box flowering-time gene

14

n.f.

386

11

CPBCSPOR

TATTAG

cytokinin-enhanced protein binding in vitro

n.f.

40, 287(-), 647(-)

518

68

ERELEE4

AWTTCAAA

ethylene responsive element

621(-)

n.f.

414(-), 555(-)

41

GARE

TAACAGA

gibberellin-responsive element

773

n.f.

n.f.

11

GAHV

TAACAAA

gibberellin response complex

n.f.

316

670(-), 814

59

WUSTAG

TTAATGG

target sequence of WUS

n.f.

917(-)

n.f.

26


Indicated positions are relative to the ATG codon (M = A/C, W = A/T, n.f. = not found).

Cosio and Dunand BMC Genomics 2010 11:528   doi:10.1186/1471-2164-11-528

Open Data