Table 1

High-throughput sequencing statistics

Method

Total Reads

Reads Used

Theoretical Coverage*

# Contigs (>100 bp)^

Total size (Mb)§


Sanger

178

178

n/a

n/a

n/a


GAI 32 single

16,852,820

9,298,356

83

5,884

6.06


GAII 70 PE

10,854,745

9,013,849

234

95

6.27


454

202,070

200,467

7

2,204

6.10


All short reads

38,764,380

23,742,926

316

256

6.26


All reads

38,764,558

23,810,966

316

115

6.27


*Based on approximated genome size of 6.5 Mb; ^Highest confident draft assemblies using Velvet 0.7.55 [22]; ^Improved, high quality draft including Sanger reads. n/a = not applicable; §Based on sum total of all contigs > 100 bp in length.

Kimbrel et al. BMC Genomics 2010 11:522   doi:10.1186/1471-2164-11-522

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