Table 2

Clade 2-specific genes

Tag

Product

Gene

Cog


VV1_0456

putative transcriptional regulator

-

COG0583K

VV1_0457

hypothetical protein VV1_0457

-

-

VV1_0458

hypothetical protein VV1_0458

-

-

VV1_0459

hypothetical protein VV1_0459

-

-

VV1_0465

exopolyphosphatase

-

COG0248FP

VV1_0515

hypothetical protein VV1_0515

-

COG3930S

VV1_0766

hypothetical protein VV1_0766

-

-

VV1_0789

hypothetical protein VV1_0789

-

-

VV1_1090

hypothetical protein VV1_1090

-

-

VV1_1094

chromosome segregation ATPase

-

-

VV1_1095

Serine/threonine protein kinase

-

COG0515RTKL

VV1_1518

3-methyladenine DNA glycosylase

-

COG0122L

VV1_1751

hypothetical protein VV1_1751

-

-

VV1_2031

Type I restriction enzyme EcoEI M protein

-

COG0286V

VV1_2037

Type I restriction enzyme EcoEI R protein

-

COG4096V

VV1_2038

transcriptional regulator

-

-

VV1_2061

GGDEF family protein OMPH_PHOPR porin-like protein H

-

COG2199T

VV1_2114

precursor

-

COG3203M

VV1_2115

hypothetical protein VV1_2115

-

COG3110S

VV1_2158

methyl-accepting chemotaxis protein

-

COG0840NT

VV1_2183

hypothetical protein VV1_2183

-

COG2378K

VV1_2184

ATPase involved in DNA repair

-

COG0419L

VV1_2228

GGDEF family protein

-

COG3706T

VV1_2321

GGDEF family protein

-

COG3614T

VV1_2326

hypothetical protein VV1_2326

-

-

VV1_2327

hypothetical protein VV1_2327

-

-

VV1_2329

hypothetical protein VV1_2329

-

-

VV1_2330

Flp pilus assembly protein CpaB

-

COG3745U

VV1_2331

Flp pilus assembly protein

-

COG4964U

VV1_2332

hypothetical protein VV1_2332

-

-

VV1_2333

pilus assembly protein CpaE-like protein

-

COG4963U

VV1_2334

Flp pilus assembly protein

-

COG4962U

VV1_2335

Flp pilus assembly protein TadB

-

COG4965U

VV1_2336

Flp pilus assembly protein TadC

-

COG4965U

VV1_2337

Flp pilus assembly protein TadD

-

COG5010U

VV1_2338

hypothetical protein VV1_2338

-

-

VV1_2339

hypothetical protein VV1_2339

-

COG4961U

VV1_2340

hypothetical protein VV1_2340

-

-

VV1_2341

azoreductase

acpD

COG1182I

VV1_2401

super-integron integrase IntIA

-

COG4974L

VV1_2708

hypothetical protein VV1_2708

-

-

VV1_2748

response regulator

-

COG3437KT

VV1_2758

amino acid transporter

-

-

VV1_2840

NhaP-type Na+/H+ and K+/H+ antiporters

-

COG0025P

VV1_2868

methyl-accepting chemotaxis protein

-

COG0840NT

VV1_3144

hypothetical protein VV1_3144

-

-

VV2_0019

alcohol dehydrogenase

-

COG1454C

VV2_0073

anti-anti-sigma regulatory factor

-

COG1366T

VV2_0074

anti-anti-sigma regulatory factor

-

COG1366T

VV2_0075

anti-sigma regulatory factor

-

COG2172T

VV2_0076

Serine phosphatase RsbU

-

-

VV2_0077

FOG: CheY-like receiver

-

COG0642T

VV2_0078

response regulator AraC-type DNA-binding domain-containing

-

COG3437KT

VV2_0212

protein

-

COG2207K

VV2_0312

hypothetical protein VV2_0312

-

-

VV2_0313

response regulator

-

COG0745TK

VV2_0627

hypothetical protein VV2_0627 AraC-type DNA-binding domain-containing

-

COG2378K

VV2_0782

protein

-

COG2207K

VV2_0783

major facilitator superfamily permease

-

-

VV2_0851

hypothetical protein VV2_0851

-

COG0845M

VV2_0864

hypothetical protein VV2_0864

-

-

VV2_0868

acetyltransferase

-

COG0456R

VV2_0881

long-chain fatty acid ABC transporter

-

COG2067I

VV2_0884

Mg2+ and Co2+ transporter

-

-

VV2_0993

transcriptional regulator

-

COG0583K

VV2_0994

multidrug resistance efflux pump

-

COG1566V

VV2_1075

dehydrogenase

-

COG1028IQR

VV2_1138

hypothetical protein VV2_1138

-

COG3904S

VV2_1149

hypothetical protein VV2_1149

-

-

VV2_1186

transcriptional regulator

-

COG0583K

VV2_1203

hypothetical protein VV2_1203

-

COG3930S

VV2_1204

glutathione synthetase

-

COG0189HJ

VV2_1273

transcriptional regulator

-

COG0583K

VV2_1274

Ca2+/H+ antiporter

-

COG0387P

VV2_1275

hypothetical protein VV2_1275

-

COG0586S

VV2_1290

hypothetical protein VV2_1290

-

COG0834ET

VV2_1303

hypothetical protein VV2_1303

-

-

VV2_1304

Beta-glucosidase-related glycosidase

-

COG1472G

VV2_1309

DMT family permease

-

-

VV2_1363

transcriptional regulator

-

COG0583K


Gulig et al. BMC Genomics 2010 11:512   doi:10.1186/1471-2164-11-512

Open Data