Table 2 |
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|
Clade 2-specific genes |
|||
|
Tag |
Product |
Gene |
Cog |
|
|
|||
|
VV1_0456 |
putative transcriptional regulator |
- |
COG0583K |
|
VV1_0457 |
hypothetical protein VV1_0457 |
- |
- |
|
VV1_0458 |
hypothetical protein VV1_0458 |
- |
- |
|
VV1_0459 |
hypothetical protein VV1_0459 |
- |
- |
|
VV1_0465 |
exopolyphosphatase |
- |
COG0248FP |
|
VV1_0515 |
hypothetical protein VV1_0515 |
- |
COG3930S |
|
VV1_0766 |
hypothetical protein VV1_0766 |
- |
- |
|
VV1_0789 |
hypothetical protein VV1_0789 |
- |
- |
|
VV1_1090 |
hypothetical protein VV1_1090 |
- |
- |
|
VV1_1094 |
chromosome segregation ATPase |
- |
- |
|
VV1_1095 |
Serine/threonine protein kinase |
- |
COG0515RTKL |
|
VV1_1518 |
3-methyladenine DNA glycosylase |
- |
COG0122L |
|
VV1_1751 |
hypothetical protein VV1_1751 |
- |
- |
|
VV1_2031 |
Type I restriction enzyme EcoEI M protein |
- |
COG0286V |
|
VV1_2037 |
Type I restriction enzyme EcoEI R protein |
- |
COG4096V |
|
VV1_2038 |
transcriptional regulator |
- |
- |
|
VV1_2061 |
GGDEF family protein OMPH_PHOPR porin-like protein H |
- |
COG2199T |
|
VV1_2114 |
precursor |
- |
COG3203M |
|
VV1_2115 |
hypothetical protein VV1_2115 |
- |
COG3110S |
|
VV1_2158 |
methyl-accepting chemotaxis protein |
- |
COG0840NT |
|
VV1_2183 |
hypothetical protein VV1_2183 |
- |
COG2378K |
|
VV1_2184 |
ATPase involved in DNA repair |
- |
COG0419L |
|
VV1_2228 |
GGDEF family protein |
- |
COG3706T |
|
VV1_2321 |
GGDEF family protein |
- |
COG3614T |
|
VV1_2326 |
hypothetical protein VV1_2326 |
- |
- |
|
VV1_2327 |
hypothetical protein VV1_2327 |
- |
- |
|
VV1_2329 |
hypothetical protein VV1_2329 |
- |
- |
|
VV1_2330 |
Flp pilus assembly protein CpaB |
- |
COG3745U |
|
VV1_2331 |
Flp pilus assembly protein |
- |
COG4964U |
|
VV1_2332 |
hypothetical protein VV1_2332 |
- |
- |
|
VV1_2333 |
pilus assembly protein CpaE-like protein |
- |
COG4963U |
|
VV1_2334 |
Flp pilus assembly protein |
- |
COG4962U |
|
VV1_2335 |
Flp pilus assembly protein TadB |
- |
COG4965U |
|
VV1_2336 |
Flp pilus assembly protein TadC |
- |
COG4965U |
|
VV1_2337 |
Flp pilus assembly protein TadD |
- |
COG5010U |
|
VV1_2338 |
hypothetical protein VV1_2338 |
- |
- |
|
VV1_2339 |
hypothetical protein VV1_2339 |
- |
COG4961U |
|
VV1_2340 |
hypothetical protein VV1_2340 |
- |
- |
|
VV1_2341 |
azoreductase |
acpD |
COG1182I |
|
VV1_2401 |
super-integron integrase IntIA |
- |
COG4974L |
|
VV1_2708 |
hypothetical protein VV1_2708 |
- |
- |
|
VV1_2748 |
response regulator |
- |
COG3437KT |
|
VV1_2758 |
amino acid transporter |
- |
- |
|
VV1_2840 |
NhaP-type Na+/H+ and K+/H+ antiporters |
- |
COG0025P |
|
VV1_2868 |
methyl-accepting chemotaxis protein |
- |
COG0840NT |
|
VV1_3144 |
hypothetical protein VV1_3144 |
- |
- |
|
VV2_0019 |
alcohol dehydrogenase |
- |
COG1454C |
|
VV2_0073 |
anti-anti-sigma regulatory factor |
- |
COG1366T |
|
VV2_0074 |
anti-anti-sigma regulatory factor |
- |
COG1366T |
|
VV2_0075 |
anti-sigma regulatory factor |
- |
COG2172T |
|
VV2_0076 |
Serine phosphatase RsbU |
- |
- |
|
VV2_0077 |
FOG: CheY-like receiver |
- |
COG0642T |
|
VV2_0078 |
response regulator AraC-type DNA-binding domain-containing |
- |
COG3437KT |
|
VV2_0212 |
protein |
- |
COG2207K |
|
VV2_0312 |
hypothetical protein VV2_0312 |
- |
- |
|
VV2_0313 |
response regulator |
- |
COG0745TK |
|
VV2_0627 |
hypothetical protein VV2_0627 AraC-type DNA-binding domain-containing |
- |
COG2378K |
|
VV2_0782 |
protein |
- |
COG2207K |
|
VV2_0783 |
major facilitator superfamily permease |
- |
- |
|
VV2_0851 |
hypothetical protein VV2_0851 |
- |
COG0845M |
|
VV2_0864 |
hypothetical protein VV2_0864 |
- |
- |
|
VV2_0868 |
acetyltransferase |
- |
COG0456R |
|
VV2_0881 |
long-chain fatty acid ABC transporter |
- |
COG2067I |
|
VV2_0884 |
Mg2+ and Co2+ transporter |
- |
- |
|
VV2_0993 |
transcriptional regulator |
- |
COG0583K |
|
VV2_0994 |
multidrug resistance efflux pump |
- |
COG1566V |
|
VV2_1075 |
dehydrogenase |
- |
COG1028IQR |
|
VV2_1138 |
hypothetical protein VV2_1138 |
- |
COG3904S |
|
VV2_1149 |
hypothetical protein VV2_1149 |
- |
- |
|
VV2_1186 |
transcriptional regulator |
- |
COG0583K |
|
VV2_1203 |
hypothetical protein VV2_1203 |
- |
COG3930S |
|
VV2_1204 |
glutathione synthetase |
- |
COG0189HJ |
|
VV2_1273 |
transcriptional regulator |
- |
COG0583K |
|
VV2_1274 |
Ca2+/H+ antiporter |
- |
COG0387P |
|
VV2_1275 |
hypothetical protein VV2_1275 |
- |
COG0586S |
|
VV2_1290 |
hypothetical protein VV2_1290 |
- |
COG0834ET |
|
VV2_1303 |
hypothetical protein VV2_1303 |
- |
- |
|
VV2_1304 |
Beta-glucosidase-related glycosidase |
- |
COG1472G |
|
VV2_1309 |
DMT family permease |
- |
- |
|
VV2_1363 |
transcriptional regulator |
- |
COG0583K |
|
|
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|
Gulig et al. BMC Genomics 2010 11:512 doi:10.1186/1471-2164-11-512 |
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