Additional file 6.

Table S5A: SNP analysis of V. vulnificus M06-24/O compared with the CMCP6 reference genomes. MAQ was used to identify SNPs from the SOLiD sequencing reads from M06-24/O compared with the CMCP6 reference genome, as described in the Methods. Pos. - Position of the nucleotide in the genomic element. Ref. - Reference base in the reference genome. Con. - Consensus base in the newly sequenced genome. Con. QS - Consensus Quality Score. Read depth - Depth of coverage at the chosen nucleotide. Avg. hits - Average number of hits of reads covering the position. HMQ - Highest mapping quality of reads covering the position. MCQ - Minimum consensus quality in the third flanking region on each side of the site. 2nd - second best call for the nucleotide. LLR - Log likelihood ratio of the second and third best call. 3rd - Third best call.

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Gulig et al. BMC Genomics 2010 11:512   doi:10.1186/1471-2164-11-512