Additional file 4.
Parent-specific gene expression in allopolyploid wheat. The method of contrasts was used to compare Ep/Ēt intensity ratios between allopolyploid wheat and its parents. Two possible ratios of parental gene expression in the synthetic polyploid were tested assuming 1:1 (AT + TC)/2) and 1:2 (1AT+2TC)/3) in silico ratio of AT:TC gene expression in the SN transcriptome. The FDR was maintained at 0.05.
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Akhunova et al. BMC Genomics 2010 11:505 doi:10.1186/1471-2164-11-505