Additional file 4.

Parent-specific gene expression in allopolyploid wheat. The method of contrasts was used to compare Ept intensity ratios between allopolyploid wheat and its parents. Two possible ratios of parental gene expression in the synthetic polyploid were tested assuming 1:1 (AT + TC)/2) and 1:2 (1AT+2TC)/3) in silico ratio of AT:TC gene expression in the SN transcriptome. The FDR was maintained at 0.05.

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Akhunova et al. BMC Genomics 2010 11:505   doi:10.1186/1471-2164-11-505