Additional file 1.

List of 40,281 parent-specific oligonucleotide features. File contains the list of 40,281 Affymetrix oligonucleotide features differentially hybridizing with AT and TC parental transcripts. The linear model described in Methods was fit to PM probe intensity data. Residuals containing the probe by genotype effect were tested for difference between genotypes by calculating the d-statistics [45] using the Significance Analysis of Microarrays (SAM) procedure implemented in the R package siggenes. The threshold Δ = 0.2 was selected to identify significantly different features at 0.1 false discovery rate.

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Akhunova et al. BMC Genomics 2010 11:505   doi:10.1186/1471-2164-11-505