Table 3

Summary of genes and transcripts matched by the probes using different databases

GenBank

RefSeq

Ensembl

ZFIN

Biomart

UCSC


Number of transcripts matched by the probes

12,803

6,688

8,076

25,665

23,212

28,356

Number of genes matched by the probes

7,069

6,560

6,347

7,003

6,983

7,725

Number of genes matched by ≥ 2 probe sets

1,296

202

726

1,809

1,439

2,069

Average number of transcripts per probe set

1.493

0.988

1.129

2.791

2.658

2.766

Average number of probe sets per gene

1.213

1.032

1.127

1.313

1.250

1.327


Yin et al. BMC Genomics 2010 11:50   doi:10.1186/1471-2164-11-50

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