Table 2 |
||||||
|
Summary of probe remapping results using different databases |
||||||
|
GenBank |
RefSeq |
Ensembl |
ZFIN |
Biomart |
UCSC |
|
|
|
||||||
|
Probes with multiple alignments to the genome |
19,585 |
19,585 |
19,585 |
19,585 |
19,585 |
19,585 |
|
Probes with no alignment to the genome |
41,609 |
42,398 |
41,972 |
41,613 |
41,488 |
41,077 |
|
Probes matching multiple genes |
2,718 |
1,674 |
432 |
2,228 |
1,592 |
1,487 |
|
Probes matching intergenic region |
65,220 |
75,916 |
81,273 |
64,394 |
66,806 |
54,532 |
|
Probes matching intron region |
8,348 |
6,912 |
9,817 |
9,049 |
10,068 |
10,911 |
|
< 3 probes per probe set |
2,369 |
762 |
1,464 |
3,884 |
3,126 |
4,378 |
|
Good probes |
109,903 |
102,505 |
95,209 |
108,999 |
107,087 |
117,782 |
|
Percentage of good probes |
44.005% |
41.043% |
38.121% |
43.643% |
42.877% |
47.160% |
|
Probe sets |
8,574 |
6,769 |
7,156 |
9,195 |
8,732 |
10,251 |
|
|
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|
Yin et al. BMC Genomics 2010 11:50 doi:10.1186/1471-2164-11-50 |
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