Table 2

Summary of probe remapping results using different databases

GenBank

RefSeq

Ensembl

ZFIN

Biomart

UCSC


Probes with multiple alignments to the genome

19,585

19,585

19,585

19,585

19,585

19,585

Probes with no alignment to the genome

41,609

42,398

41,972

41,613

41,488

41,077

Probes matching multiple genes

2,718

1,674

432

2,228

1,592

1,487

Probes matching intergenic region

65,220

75,916

81,273

64,394

66,806

54,532

Probes matching intron region

8,348

6,912

9,817

9,049

10,068

10,911

< 3 probes per probe set

2,369

762

1,464

3,884

3,126

4,378

Good probes

109,903

102,505

95,209

108,999

107,087

117,782

Percentage of good probes

44.005%

41.043%

38.121%

43.643%

42.877%

47.160%

Probe sets

8,574

6,769

7,156

9,195

8,732

10,251


Yin et al. BMC Genomics 2010 11:50   doi:10.1186/1471-2164-11-50

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