Open Access Highly Accessed Research article

Integrating multiple genome annotation databases improves the interpretation of microarray gene expression data

Jun Yin1*, Sarah McLoughlin2, Ian B Jeffery1, Antonino Glaviano2, Breandan Kennedy2 and Desmond G Higgins1

Author Affiliations

1 School of Medicine and Medical Science, Conway Institute, University College Dublin, Dublin, Ireland

2 School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Dublin, Ireland

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BMC Genomics 2010, 11:50  doi:10.1186/1471-2164-11-50

Published: 20 January 2010

Additional files

Additional file 1:

Further investigation of parameters used in probe remapping

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Additional file 2:

Real-time PCR primer sequences and results

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Additional file 3:

Probe sequence and CDF R libraries of probe remapping using UCSC database, and annotation of the remapped probe sets

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Additional file 4:

Perl scripts mapping probes, and clustering gene transcripts

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Additional file 5:

Gene annotation of UCSC transcripts by clustering transcripts overlapping in coding exons

Format: XLS Size: 4.6MB Download file

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