Table 2

dN, dS and dN/dS

Codon type

Initial exon

Internal exon

Final exon

dN

dS

dN/dS

dN

dS

dN/dS

dN

dS

dN/dS


CG containing codons in CGI

0.131

0.512

0.257

0.097

0.910

0.106

0.100

0.800

0.125


CG containing codons out of CGI

0.136

0.987

0.138

0.093

1.510

0.061

0.114

1.273

0.090


AG containing codons in CGI

0.146

0.485

0.302

0.101

0.644

0.157

0.109

0.599

0.181


AG containing codons out of CGI

0.134

0.508

0.264

0.087

0.535

0.164

0.112

0.533

0.210


GC containing codons in CGI

0.130

0.381

0.342

0.098

0.534

0.183

0.101

0.503

0.201


GC containing codons out of CGI

0.145

0.488

0.297

0.095

0.526

0.180

0.122

0.519

0.235


GA containing codons in CGI

0.120

0.381

0.314

0.084

0.531

0.159

0.091

0.463

0.197


GA containing codons out of CGI

0.114

0.450

0.252

0.075

0.489

0.154

0.096

0.479

0.200


All codons in CGIs

0.097

0.344

0.282

0.073

0.468

0.157

0.074

0.443

0.167


All codons out of CGIs

0.099

0.389

0.254

0.063

0.407

0.155

0.083

0.404

0.205


Rates were calculated separately for various gene elements and various classes of codons.

Medvedeva et al. BMC Genomics 2010 11:48   doi:10.1186/1471-2164-11-48

Open Data