Table 2

List of non-protein-codning microRNA genes identified in MHC by Rfam analysis

Gene Name

Rfam Accession No.

Start coordinate

End coordinate

Orientation

Scorea


let-7

RF00027

35

51

+

34.2

miR-160

RF00247

173327

173343

+

34.2

miR-156

RF00073

180706

180722

-

34.2

miR-17

RF00051

243137

243153

-

34.2

miR-166

RF00075

465267

465295

+

34.2

miR-166

RF00075

1062114

1062131

-

36.2

miR-2

RF00047

1243062

1243078

+

34.2

lin-4

RF00052

1608564

1608580

+

34.2

miR-10

RF00104

1978042

1978059

+

36.2

miR-101

RF00253

2046800

2046816

+

34.2

miR-395

RF00451

2082358

2082373

-

32.2

miR-156

RF00073

2084006

2084023

-

36.2

miR-219

RF00251

2098884

2098955

-

127

miR-219

RF00251

2098930

2098950

-

42.1

miR-156

RF00073

2131290

2131307

-

36.2

miR-156

RF00073

2339014

2339030

+

34.2

miR-166

RF00075

2348202

2348217

-

32.2

miR-399

RF00445

2354071

2354086

+

32.2


a The scores are bits (logs-odds) scores which represent the log of the probability of the query given the model over the probility of random sequence given the model.

Gao et al. BMC Genomics 2010 11:466   doi:10.1186/1471-2164-11-466

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