MLTreeMap: Placing anonymous sequence fragments into reference phylogenies. Top: overview of the procedure. Informative marker genes (or fragments thereof) are automatically extracted from raw, un-annotated nucleotide sequence fragments, aligned to reference sequences and then placed into externally provided gene trees using RAxML. Below: Overview of reference phylogenies that are currently available in MLTreeMap.
Stark et al. BMC Genomics 2010 11:461 doi:10.1186/1471-2164-11-461