Table 6

Detailed description of genes and unassigned regions (UR) within the partial mt genome of Thylaeodus sp.

Gene

Start^a

End

Length

Amino acids

Start codon

End codon^b

UR (%AT)^c

rrnS (partial)

1

431

431

-

5

trnV

437

504

68

-

13 (53.8)

trnE

518

591

74

-

0

rrnL

592

1882

1291

-

16 (56.3)

trnL_CUN

1899

1964

66

-

99 (70.7)

nad6

2064

2562

499

166

ATG

T--

0

cob

2563

3703

1141

380

ATG

T--

-6

trnS_UCN

3698

3766

69

-

1

trnT*

3768

3834

67

-

11 (100.0)

nad4L

3846

4131

286

95

ATG

T--

-2

nad4

4130

5491

1362

454

ATG

TAA

6

trnF

5498

5565

68

-

-

-

9

trnY

5575

5639

65

-

-

-

-1

trnL_UUR

5639

5708

70

-

-

-

11 (63.6)

cox1 (partial)

5720

6415

696

232

ATG

N/A

0

^a Genes are not arranged relative to cox1 because only a partial genome is available. Those genes encoded on the "-" strand are indicated with an asterisk (*).

^b T, and TA, refer to instances where incomplete stop codons were inferred.

^c Unassigned regions are identified by positive values. Negative values indicate overlap between adjacent genes. Values in brackets refer to %AT of the associated UR (only those UR >10 bp in length were analyzed).

Rawlings et al. BMC Genomics 2010 11:440   doi:10.1186/1471-2164-11-440