Table 3

Detailed description of genes and unassigned regions (UR) within the complete mt genome (15641 bp) of Dendropoma gregarium

Gene

Starta

End

Length

Amino acids

Start codon

End codonb

UR (%AT)c


cox1

1

1533

1533

511

ATG

TAG

3

trnD

1537

1611

75

-

-

-

2

atp8

1614

1769

156

52

ATG

TAA

-7

atp6

1763

2452

690

230

ATG

TAA

7

trnN

2460

2535

76

-

-

-

2

nad5

2538

4259

1722

574

ATA

TAA

27 (74.1)

trnA

4287

4354

68

-

-

-

1

cox3

4356

5134

779

260

ATG

TA-

0

trnSAGN

5135

5201

67

-

-

-

38 (60.5)

nad2

5240

6252

1013

338

ATG

TA-

0

trnR

6253

6321

69

-

-

-

55 (72.7)

trnY*

6377

6443

67

-

-

-

1

trnM*

6445

6514

70

-

-

-

10 (30.0)

trnC*

6525

6597

73

-

-

-

1

trnW*

6599

6667

69

-

-

-

11 (50.0)

trnQ*

6679

6735

57

-

-

-

-3

trnG*

6733

6798

66

-

-

-

2

trnE*

6801

6872

72

-

-

-

0

rrnS

6873

7851

979

-

-

-

0

trnV

7852

7922

71

-

-

-

16 (50.0)

trnK1

7939

8013

75

-

-

-

55 (65.5)

trnP

8069

8139

71

-

-

-

1

nad6

8141

8629

489

163

ATG

TAG

0

rrnL

8630

9978

1349

-

-

-

0

trnLUUR

9979

10049

71

-

-

-

-2

trnLCUN

10048

10116

69

-

-

-

2

nad1

10119

11049

931

310

ATG

T--

125 (52.8)

cob

11175

12323

1149

383

ATG

TAA

13 (84.6)

trnSUCN

12337

12407

71

-

-

-

4

tRNA T*

12412

12479

68

-

-

-

7

nad4L

12487

12780

294

98

ATG

TAA

-7

nad4

12774

14129

1356

452

ATG

TAG

30 (66.7)

trnH

14160

14227

68

-

-

-

0

trnF

14228

14296

69

-

-

-

6

trnI

14303

14375

73

-

-

-

137 (58.4)

trnK2

14513

14586

74

-

-

-

2

nad3

14589

14939

351

117

ATG

TAG

7

cox2

14947

15636

690

230

ATG

TAG

5


a Genes are arranged relative to cox1. Those encoded on the "-" strand are indicated with an asterisk (*).

b T, and TA, refer to instances where incomplete stop codons are inferred.

c Unassigned regions are identified by positive values. Negative values indicate overlap between adjacent genes. Values in brackets refer to %AT of the associated UR (only those UR >10 bp in length were analyzed).

Rawlings et al. BMC Genomics 2010 11:440   doi:10.1186/1471-2164-11-440

Open Data