Table 2

LTR retroelements overlapping with transcriptionally active regions.1

Family

Scaffold

Start

Element

length (bp)

Total length

of TARs (bp)

Expression level2

Similarity

of LTRs (%)3


Dpul_B25

48

724286

3577

1557

3.84

97.4

Dpul_C7

836

2600

5916

1150

0.58

99.3

Dpul_C8

40

919844

5282

1757

4.13

98.4

Dpul_C8

118

81961

5289

2171

3.16

99.7

Dpul_C15

161

267301

4681

576

0.73

100.0

Dpul_C17

175

143408

5473

1453

4.78

92.5

Dpul_C28

260

73082

5837

1066

4.78

92.7

Dpul_C33

35

412714

4633

828

0.58

100.0

Dpul_C40

71

404089

4744

4041

5.37

99.5

Dpul_G7

169

162521

7344

888

3.95

99.2

Dpul_G31

22

74408

13211

536

3.61

99.1

Dpul_G31

49

697716

13403

947

2.97

100.0


1 Total length of transcriptionally active regions (TARs) > 500 bp.

2 Maximum value of median intensity in each TAR; the value is log (intensity).

3 Similarity measured between LTRs in each element.

Rho et al. BMC Genomics 2010 11:425   doi:10.1186/1471-2164-11-425

Open Data