Table 4 |
||||||||||
|
Adjacent linkage disequilibrium (r2 and |D'|) on 29 autosomes (BTA) |
||||||||||
|
Chromosome |
N |
Length (Mb) |
Spacing (kb) |
Mean r2 |
SD (r2) |
Median r2 |
Mean |D'| |
SD |D'| |
Median |D'| |
MAF |
|
|
||||||||||
|
1 |
2,443 |
158 |
64 |
0.22 |
0.25 |
0.11 |
0.73 |
0.32 |
0.90 |
0.28 |
|
2 |
1,970 |
136 |
69 |
0.22 |
0.25 |
0.11 |
0.70 |
0.33 |
0.85 |
0.29 |
|
3 |
1,859 |
121 |
65 |
0.22 |
0.25 |
0.12 |
0.73 |
0.33 |
0.90 |
0.29 |
|
4 |
1,804 |
120 |
66 |
0.20 |
0.23 |
0.10 |
0.70 |
0.34 |
0.86 |
0.29 |
|
5 |
1,603 |
121 |
75 |
0.20 |
0.24 |
0.10 |
0.71 |
0.33 |
0.87 |
0.29 |
|
6 |
1,848 |
119 |
64 |
0.21 |
0.25 |
0.11 |
0.70 |
0.33 |
0.85 |
0.29 |
|
7 |
1,615 |
112 |
69 |
0.23 |
0.25 |
0.13 |
0.71 |
0.32 |
0.86 |
0.29 |
|
8 |
1,721 |
113 |
65 |
0.21 |
0.25 |
0.11 |
0.73 |
0.32 |
0.89 |
0.28 |
|
9 |
1,487 |
105 |
70 |
0.20 |
0.23 |
0.10 |
0.70 |
0.33 |
0.85 |
0.28 |
|
10 |
1,559 |
104 |
66 |
0.21 |
0.24 |
0.12 |
0.71 |
0.32 |
0.84 |
0.29 |
|
11 |
1,654 |
107 |
64 |
0.20 |
0.23 |
0.10 |
0.70 |
0.33 |
0.85 |
0.29 |
|
12 |
1,260 |
91 |
72 |
0.20 |
0.24 |
0.10 |
0.70 |
0.33 |
0.84 |
0.28 |
|
13 |
1,319 |
84 |
63 |
0.21 |
0.24 |
0.12 |
0.72 |
0.33 |
0.90 |
0.30 |
|
14 |
1,326 |
84 |
62 |
0.23 |
0.26 |
0.13 |
0.72 |
0.32 |
0.88 |
0.30 |
|
15 |
1,267 |
85 |
66 |
0.19 |
0.23 |
0.09 |
0.70 |
0.33 |
0.87 |
0.29 |
|
16 |
1,166 |
81 |
69 |
0.22 |
0.25 |
0.12 |
0.72 |
0.32 |
0.88 |
0.29 |
|
17 |
1,194 |
74 |
62 |
0.19 |
0.23 |
0.10 |
0.72 |
0.32 |
0.87 |
0.29 |
|
18 |
1,013 |
65 |
64 |
0.18 |
0.22 |
0.09 |
0.66 |
0.34 |
0.78 |
0.30 |
|
19 |
1,039 |
64 |
61 |
0.19 |
0.23 |
0.10 |
0.70 |
0.33 |
0.85 |
0.29 |
|
20 |
1,126 |
71 |
63 |
0.21 |
0.23 |
0.12 |
0.72 |
0.31 |
0.85 |
0.29 |
|
21 |
1,031 |
71 |
69 |
0.20 |
0.24 |
0.10 |
0.68 |
0.33 |
0.81 |
0.30 |
|
22 |
965 |
61 |
63 |
0.19 |
0.25 |
0.09 |
0.69 |
0.33 |
0.82 |
0.28 |
|
23 |
818 |
52 |
63 |
0.18 |
0.22 |
0.09 |
0.64 |
0.35 |
0.74 |
0.30 |
|
24 |
922 |
62 |
67 |
0.20 |
0.24 |
0.10 |
0.68 |
0.33 |
0.82 |
0.29 |
|
25 |
770 |
42 |
55 |
0.20 |
0.23 |
0.11 |
0.68 |
0.33 |
0.79 |
0.30 |
|
26 |
804 |
51 |
63 |
0.18 |
0.24 |
0.08 |
0.67 |
0.34 |
0.82 |
0.28 |
|
27 |
745 |
45 |
60 |
0.17 |
0.22 |
0.07 |
0.66 |
0.34 |
0.77 |
0.29 |
|
28 |
731 |
46 |
63 |
0.17 |
0.20 |
0.09 |
0.65 |
0.34 |
0.73 |
0.30 |
|
29 |
811 |
51 |
63 |
0.17 |
0.22 |
0.09 |
0.68 |
0.33 |
0.79 |
0.29 |
|
X |
690 |
148 |
215 |
0.18 |
0.23 |
0.08 |
0.59 |
0.33 |
0.63 |
0.29 |
|
All |
38,560 |
2656 |
68 |
0.20 |
0.24 |
0.11 |
0.70 |
0.33 |
0.85 |
0.29 |
|
|
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|
Bohmanova et al. BMC Genomics 2010 11:421 doi:10.1186/1471-2164-11-421 |
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