Table 1 |
|||||
|
Distribution of markers |
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|
HapMap SNPs included in GWAS data |
Number of markers (start position - end position in Mb) |
||||
|
Chromosome |
Panel based on δ |
Panel based on FST |
Panel based on 21 k random markers |
Panel based on 2 k random markers |
|
|
|
|||||
|
1 |
55,147 |
167 (0.8-247.2) |
150 (0.8-247.2) |
1,734 (0.7-247.1) |
171 (2.3-245.7) |
|
2 |
58,091 |
184 (0.6-241.7) |
177 (0.6-241.7) |
1,545 (0.4-242.7) |
155 (0.6-241.0) |
|
3 |
47,963 |
139 (0.3-199.1) |
132 (0.3-199.1) |
1,376 (0.3-198.9) |
137 (0.4-198.2) |
|
4 |
43,771 |
139 (2.2-190.9) |
131 (2.2-190.9) |
1,327 (0.3-191.0) |
143 (0.7-187.2) |
|
5 |
44,805 |
115 (1.0-180.6) |
106 (1.0-180.6) |
1,303 (0.5-180.6) |
133 (0.5-180.4) |
|
6 |
44,882 |
107 (0.9-170.4) |
95 (0.9-170.4) |
1,182 (0.1-170.8) |
146 (0.2-170.8) |
|
7 |
37,440 |
112 (1.2-158.5) |
104 (1.2-158.5) |
1,126 (0.2-158.5) |
98 (1.3-157.5) |
|
8 |
38,149 |
115 (0.3-144.9) |
107 (0.3-144.9) |
1,006 (0.4-146.1) |
97 (1.1-143.1) |
|
9 |
32,770 |
82 (0.3-140.1) |
76 (0.3-140.1) |
1,003 (0.2-140.2) |
91 (0.9-140.2) |
|
10 |
37,715 |
105 (0.7-135.2) |
98 (0.7-135.2) |
1,042 (0.7-135.3) |
107 (1.3-130.6) |
|
11 |
34,812 |
92 (2.6-132.9) |
84 (2.6-132.9) |
965 (0.2-134.5) |
93 (1.9-134.2) |
|
12 |
33,366 |
87 (0.3-131.1) |
75 (0.3-131.1) |
1,072 (0.1-132.1) |
101 (1.8-129.5) |
|
13 |
26,886 |
63 (18.9-113.8) |
61 (18.9-113.8) |
824 (18.2-114.1) |
87 (18.2-112.3) |
|
14 |
22,056 |
68 (19.9-106.3) |
61 (19.9-106.3) |
742 (19.5-105.1) |
70 (19.5-102.9) |
|
15 |
20,351 |
66 (20.6-99.6) |
59 (20.6-99.6) |
726 (20.3-99.9) |
69 (20.4-99.2) |
|
16 |
21,527 |
60 (0.9-88.7) |
58 (0.9-86.1) |
776 (0.1-88.6) |
66 (3.0-87.6) |
|
17 |
16,077 |
53 (0.1-74.5) |
49 (0.1-74.5) |
708 (0.1-78.6) |
76 (0.8-76.0) |
|
18 |
20,776 |
49 (1.0-75.7) |
46 (1.0-75.7) |
722 (0.3-76.1) |
72 (0.3-75.5) |
|
19 |
9,560 |
38 (1.6-62.2) |
36 (1.6-63.0) |
488 (0.3-63.7) |
42 (1.0-63.7) |
|
20 |
18,133 |
52 (0.9-61.2) |
50 (0.9-61.2) |
648 (0.0-62.4) |
60 (0.3-61.5) |
|
21 |
9,948 |
26 (15.9-45.3) |
24 (15.9-45.3) |
344 (13.3-46.8) |
40 (14.8-46.7) |
|
22 |
8,831 |
24 (17.0-48.7) |
21 (17.0-48.7) |
415 (15.3-49.5) |
46 (15.3-49.5) |
|
X |
25,327 |
133 (0.8-154.1) |
123 (2.6-154.1) |
563 (0.1-154.7) |
69 (0.2-152.6) |
|
Total |
708,383 |
2,076 |
1,923 |
21,637 |
2,169 |
|
|
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|
Chen et al. BMC Genomics 2010 11:417 doi:10.1186/1471-2164-11-417 |
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