Table 2

Total sRNA counts and element abundance in 21 annotated BACs, TREP database and blastn hits in T. aestivum NCBI EST collection

Total sRNA (%)

21 BAC counts (%)

TREP counts (%)

EST hits (%)


Class I

Gypsy

19.9

38.2

23.9

43.1

Copia

57.9

19.4

15.7

26.2

LINE

0.3

4.3

5.4

1.3

Class II

CACTA

3.6

14.3

12.5

9.3

Harbinger

0.3

0.9

3.1

0.9

Mutator

0.3

0.9

3.6

0.7

Mariner

17.7

22.0

35.7

18.5


Data are expressed as percentage of the total values per column.

Cantu et al. BMC Genomics 2010 11:408   doi:10.1186/1471-2164-11-408

Open Data