Table 3

Matches of newt heart ESTs to existing NCBInr entries for N. viridescens.

Description

Accession No

Match to con.

E-value


NADH dehydrogenase subunit 1 [Notophthalmus viridescens]

gi|213136180; gb|ACJ43727.1

883

< 1e-150


NADH dehydrogenase subunit 1 [Notophthalmus viridescens]

gi|13561422; gb|AAK30304.1

883

< 1e-150


NADH dehydrogenase subunit 2 [Notophthalmus viridescens]

gi|213136181; gb|ACJ43727.1

119

< 1e-150


NADH dehydrogenase subunit 2 [Notophthalmus viridescens]

gi|13561421; gb|AAK30303.1

119

< 1e-150


cytochrome c oxidase subunit 1 [Notophthalmus viridescens]

gi|213136182; gb|ACJ43728.1

47

2245

< 1e-1508e-096


cytochrome c oxidase subunit 1 [Notophthalmus viridescens]

gi|13561423; gb|AAK30305.1

47

2e-009


cytochrome oxidase subunit I [Notophthalmus viridescens]

gi|156788427;gb|ABU95787.1

47

2245

< 1e-1501e-108


cytochrome c oxidase subunit 2 [Notophthalmus viridescens]

gi|213136183; gb|ACJ43729.1

47

2096

2909

2230

< 1e-150< 1e-1501e-104

5e-049


ATP synthase F0 subunit 8 [Notophthalmus viridescens]

gi|213136184; gb|ACJ43730.1

104

3e-059


ATP synthase F0 subunit 6 [Notophthalmus viridescens]

gi|213136185; gb|ACJ43731.1

104

2301

< 1e-1506e-027


cytochrome c oxidase subunit 3 [Notophthalmus viridescens]

gi|213136186; gb|ACJ43732.1

55

2933

< 1e-150< 1e-150


NADH dehydrogenase subunit 3 [Notophthalmus viridescens]

gi|213136187; gb|ACJ43733.1

483

< 1e-150


NADH dehydrogenase subunit 4 [Notophthalmus viridescens]

gi|213136189; gb|ACJ43735.1

498

< 1e-150


NADH dehydrogenase subunit 4 [Notophthalmus viridescens]

gi|58202527; gb|AAW67315.1

498

< 1e-150


NADH dehydrogenase subunit 5 [Notophthalmus viridescens]

gi|213136190; gb|ACJ43736.1

428

< 1e-150


NADH dehydrogenase subunit 6 [Notophthalmus viridescens]

gi|213136191; gb|ACJ43737.1

428

< 1e-150


cytochrome b [Notophthalmus viridescens]

gi|213136192; gb|ACJ43738.1

2181

< 1e-150


cytochrome b [Notophthalmus viridescens]

gi|58202439; gb|AAW67271.1

2181

< 1e-150


cytochrome b [Notophthalmus viridescens]

gi|75858084; gb|ABA28616.1

2181

< 1e-150


cytochrome b [Notophthalmus viridescens]

gi|75858082; gb|ABA28615.1

2181

1e-114


cytochrome b

gi|529472; gb|AAA31972.1

2181

1e-105


cytochrome b

gi|529470; gb|AAA31971.1

2181

4e-054


histone H3a [Notophthalmus viridescens]

gi|90185040; gb|ABD91461.1

925

6e-025


Newt histone H4 gene, partial

J00954.1; GI:213407

2887

4e-046


Tubulin alpha chain

Q91060; GI:3024695

1759

1820

1653

< 1e-150< 1e-1502e-029


alpha-tubulin [Notophthalmus viridescens]

gi|468544; emb|CAA83457.1

1759

1820

1653

< 1e-150< 1e-1502e-029


cytokeratin type II [Notophthalmus viridescens]

gi|2370339; emb|CAA04655.1

145

5e-026


cytokeratin 8 [Notophthalmus viridescens]

gi|2370339; emb|CAA04655.1

145

< 1e-150


complement component C3 [Notophthalmus viridescens]

gi|28372361; gb|AAO38043.1

2286

1e-103


tissue inhibitor of metalloproteinase 1 [N. viridescens]

gi|82659076; gb|ABB88702.1

952

< 1e-150


Significant similarities to the newt EST database were obtained for 30 entries from the NCBInr database. Most contigs matched to mitochondrial-encoded proteins

Borchardt et al. BMC Genomics 2010 11:4   doi:10.1186/1471-2164-11-4

Open Data