Table 6

Co-localization of CpG islands and alternative promoters.

Numbers of overlapping islands


Method

All the TSSs

Unique TSS

Multiple TSSs


TJ

13,759

8,868 (64.45%)

4,891 (35.55%)


UCSC

11,826

8,143 (68.86%)

5,518 (31.14%)


CpGproD

15,319

9,801 (63.98%)

5,518 (36.02%)


CpGcluster islands:


relaxed set*

15,095

12,034 (79.72%)

3,061 (20.28%)


strict set**

10,325

7,659(74.18%)

2,666 (25.82%)


*p-value ≤ 1E-5; ** p-value ≤ 1E-20

Hackenberg et al. BMC Genomics 2010 11:327   doi:10.1186/1471-2164-11-327

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