Table 1

Co-localization of CpG islands and the promoter region.

Method

Number of predicted islands

Genome coverage (%)

Promoter overlap (R13)


Number of islands

%


TJ

37,323

1.43

14,034

37.60


UCSC

27,639

0.74

13,369

48.40


CpGproD

76,886

2.81

14,814

19.30


CpGcluster:


relaxed set*

198,702

1.90

30,660

15.43


strict set**

25,454

0.65

13,349

52.40


*p-value ≤ 1E-5;** p-value ≤ 1E-20

Hackenberg et al. BMC Genomics 2010 11:327   doi:10.1186/1471-2164-11-327

Open Data