Table 3

SNP discovery statistics. Loose criterion: non-gap consensus in the multiple alignment, minority nucleic allele found in at least two ESTs. Strict criterion: non-gap consensus in the multiple alignment, minority nucleic allele found in at least 25% of ESTs covering the position, at least 6x coverage at the position. Non-synonymous and synonymous SNPs were counted via best BLAST hits to B. mori.

SNPs

Transversions

Transitions

Non-Syn

Syn

Contigs With SNPs


Loose SNP Criterion


E. p.

94,783

42,719

52,064

5,341

20,520

8,042 (7.52 Mbp)

P. z.

127,004

54,934

72,070

10,193

36,170

8,888 (7.97 Mbp)


Strict SNP Criterion


E. p.

36,014

15,895

20,119

1,648

8,273

6,298 (6.11 Mbp)

P. z.

62,655

26,545

36,110

4,527

18,509

7,223 (6.75 Mbp)


O'Neil et al. BMC Genomics 2010 11:310   doi:10.1186/1471-2164-11-310

Open Data