Table 1

Statistics for alternate assemblies. The last column indicates the average Ortholog Hit Ratio (a measure of assembly quality, see Annotation) of unigenes with hits to Bombyx mori.

Contigs (Coverage)

Singletons

Assembly Size

BP in Singletons

B. m. Hits


CAP3 Defaults (-p 90 -h 20)


E. p.

15,444 (8.39×)

27,516

24.3 Mbp

46.0%

12,763

0.352

P. z.

17,983 (8.12×)

28,884

25.1 Mbp

43.0%

16,113

0.356


CAP3 -p 85 -h 90


E. p.

11,687 (10.07×)

20,053

19.1 Mbp

42.4%

10,183

0.372

P. z.

13,332 (9.78×)

20,563

19.5 Mbp

38.9%

12,740

0.375


Celera Standard


E. p.

23,263 (8.35×)

13,444

20.6 Mbp

21.3%

11,625

0.384

P. z.

25,822 (8.05×)

21,397

22.9 Mbp

24.4%

16,755

0.398


Celera Final


E. p.

17,110 (10.05×)

10,934

16.4 Mbp

21.3%

9,393

0.402

P. z.

19,110 (9.63×)

18,847

18.5 Mbp

25.9%

12,485

0.412


O'Neil et al. BMC Genomics 2010 11:310   doi:10.1186/1471-2164-11-310

Open Data