Table 1

Identification of genomic excess for array features that represent X chromosome genes.

Normalization

Test Species

True Positives (rate)

False Positives (rate)

False Negatives (rate)


1000 conserved genes

D. melanogaster

2940 (93%)

569 (16%)

206 (7%)

D. simulans

1211 (37%)

274 (18%)

2021 (63%)

D. yakuba

804 (26%)

662 (45%)

2243 (74%)

100 conserved genes

D. melanogaster

2921 (93%)

614 (17%)

225 (7%)

D. simulans

944 (29%)

146 (13%)

2288 (71%)

D. yakuba

522 (17%)

307 (37%)

2525 (83%)

All genes

D. melanogaster

2916 (93%)

372 (11%)

230 (7%)

D. simulans

1685 (52%)

1079 (39%)

1547 (48%)

D. yakuba

1698 (56%)

3404 (67%)

1349 (44%)


Machado and Renn BMC Genomics 2010 11:304   doi:10.1186/1471-2164-11-304

Open Data